| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1100819 | NA (NA) | 6 (0.070) | 4/170 | NT | NA | intergenic (+32/+32) | ycdZ/csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| ? | NC_000913 | = 1100840 | NA (NA) | intergenic (+53/+11) | ycdZ/csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein | |||||
GGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1100733‑1100819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaAGCCGGAATTATCATCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGC < NC_000913/1100840‑1100743 GGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAAAGCCGGAATTATC < 1:2034906/100‑1 AAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAAAGCCGGAATTATCATCCGGCATTTT < 2:2026217/100‑1 ACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAAAGCCGGAATTATCATCCGGCATTTTACTG < 1:1624297/100‑1 ACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAAAGCCGGAATTATCATCCGGCATTTTACTG < 2:1183366/100‑1 ACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAAAGCCGGAATTATCATCCGGCATTTTACTG < 2:1186508/100‑1 GGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAAAGCCGGAATTATCATCCGGCATTTTACTGTT < 1:2081021/100‑1 AAAAAGCCGGAATTATCATCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTT > 2:1824708/1‑100 AAAGCCGGAATTATCATCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGC < 2:113429/100‑1 AAAGCCGGAATTATCATCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGC < 2:138362/100‑1 AAAGCCGGAATTATCATCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGC < 2:2540839/100‑1 GGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1100733‑1100819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaAGCCGGAATTATCATCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGC < NC_000913/1100840‑1100743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |