New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1177245	72 (0.790)	13 (0.160)	9/162	NT	15.3%	coding (627/702 nt)	lolD	outer membrane‑specific lipoprotein transporter subunit
	?	NC_000913	= 1177257	79 (0.950)					coding (639/702 nt)	lolD	outer membrane‑specific lipoprotein transporter subunit

GTAACCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1177139‑1177245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactggcgGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGCTGTCGG  <  NC_000913/1177257‑1177160                                                                                                                                                                                                                GTAACCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCA                                                                                                           <  2:741794/100‑1  TAACCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCAGCGCCTTCCTGGTGGTTACTCACG‑ACCTGCA                                                                                                           <  1:104798/99‑1    ACCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAAC                                                                                                         >  2:1699808/1‑99     CCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTG                                                                                                       >  2:91729/1‑100     CCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTG                                                                                                       >  2:2181825/1‑100     CCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTG                                                                                                       >  2:1972132/1‑100       TCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGC                                                                                                     >  1:2536691/1‑100       TCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGC                                                                                                     <  2:2231927/100‑1                           AGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGT                                                                                 <  1:2535903/100‑1                            GCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACTTGCAACTGGCGGCTCATACGTTTCGCCAGTT                                                                                <  1:1541617/100‑1                            GCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTT                                                                                <  2:796922/100‑1                              ATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGC                                                                              <  2:196667/100‑1                              ATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGC                                                                              <  2:621633/100‑1                              ATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGC                                                                              <  1:934943/100‑1                               TCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGCA                                                                             <  2:1591915/100‑1                               TCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGCA                                                                             <  1:52350/100‑1                                 TTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGCAGG                                                                           <  2:1023485/100‑1                                   CCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGCAGGTC                                                                         <  2:2569790/100‑1                                    CAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGCAGGTCG                                                                        <  2:627018/100‑1                                     AGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCGGCTCATACGTTTCGCCAGTTGCAGGTCGT                                                                       <  2:2573129/100‑1                                              GGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACGCATTTCTAACTGGCGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACC                                                               <  1:1519486/100‑1                                                                                                     AACTGGCGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGC        <  2:1107551/100‑1                                                                                                     AACTGGCGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGC        <  2:2577810/100‑1                                                                                                       CTGGCGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGCTG      >  2:279729/1‑100                                                                                                         GGCGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGCTGTC    >  1:2023120/1‑100                                                                                                          GCGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGCTGTCG   <  2:1997611/100‑1                                                                                                           CGGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGCTGTCGG  >  1:1280438/1‑100                                                                                                                                                                                                                GTAACCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAATTGAATCGCTTGCAGGGCACCGCCTTCCTGGTGGTTACTCACG‑ACCTGCAACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1177139‑1177245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactggcgGCTCATACGTTTCGCCAGTTGCAGGTCGTGAGTAACCACCAGGAAGGCGGTGCCCTGCAAGCGATTCAATTCCCCAAGCAACTGGAAGATGCTGTCGG  <  NC_000913/1177257‑1177160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.