| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1534883 = | NA (NA) | 7 (0.080) | 8/162 | NT | NA | noncoding (1/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1534913 = | NA (NA) | noncoding (31/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1534988‑1534883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGC > NC_000913/1534913‑1535011 GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCA < 2:1624632/100‑1GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCA < 2:1624657/100‑1GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCCTTTACGCCGCA > 1:240399/1‑100 CGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATC > 2:674728/1‑100 CGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATC > 1:2037234/1‑100 CGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATC > 1:2436988/1‑100 ATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGG < 1:1130086/100‑1 ATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGG < 2:46333/100‑1 TGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGC < 2:1114720/100‑1 TGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGC < 2:778932/100‑1 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCA < 2:2368237/100‑1 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCA < 2:2420255/100‑1 GGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTCCTACCGGGCTAATGTATGCCGGATAAGGCGGTTACGCCGCATCCGGCAT > 1:2546245/1‑100 CAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCATAC < 1:2125855/100‑1 ATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAAT > 2:756074/1‑100 ATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTG > 1:2226340/1‑98 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 2:1080635/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 1:1988225/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 1:1196167/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAAAGGTTTCAGAGTTCAATTGCACATTC > 1:1285143/1‑100 GATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCAT > 2:2574013/1‑97 ATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCG > 2:1470205/1‑100 ATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCG < 2:1579527/100‑1 TCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGC < 2:297600/100‑1 CCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCT > 2:2268201/1‑100 CCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGC < 2:1057799/99‑1 CGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTG < 1:712095/100‑1 CGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTG > 1:1452216/1‑100 GCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTG < 1:720955/100‑1 CATACATTAGTCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTCCCTATTCGGCATGAAACAAAATCACCGCTGTGC < 1:1705568/100‑1 GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1534988‑1534883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGC > NC_000913/1534913‑1535011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |