New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1592638NA (NA)8 (0.100) 6/156 NT NA noncoding (8/25 nt) REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1592647 NA (NA)noncoding (17/25 nt) REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences

CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1592529‑1592638
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagccgcatgTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGCGTT  <  NC_000913/1592647‑1592549
                                                                                                                                                                                                                 
ccTATCCGCTCTACGGGATAAACGCAGCGATATCCGCGATCGCGGAGAAAAAGGAGGATTTAAATAAGGCGTTGATGCTCCGTTTGAAGTCGGCAATATT                                                                                                               >  1:408558/3‑100
CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCTCCGTTTGAAGTCGGCAATATT                                                                                                               >  1:1089660/1‑100
CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATT                                                                                                               >  1:2586000/1‑100
 TTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTA                                                                                                              <  1:276522/100‑1
  TATCCGCTCAACGGGATAAACGCTGCGATATCCGCGATAGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAA                                                                                                             <  1:211935/100‑1
   ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG                                                                                                            >  2:2006708/1‑100
   ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG                                                                                                            >  1:388917/1‑100
   ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG                                                                                                            <  1:494310/100‑1
   ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG                                                                                                            <  2:1044344/100‑1
    TCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGC                                                                                                           <  2:237639/100‑1
    TCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGC                                                                                                           <  1:592146/100‑1
     CCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCC                                                                                                          <  2:393140/100‑1
     CCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCC                                                                                                          >  2:1202441/1‑100
     CCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCC                                                                                                          >  2:1134819/1‑100
          CTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG                                                                                                     >  2:885821/1‑100
          CTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG                                                                                                     <  2:170361/100‑1
          CTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCAT                                                                                                      <  1:1646056/99‑1
                          GCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGG                                                                                     <  2:126089/100‑1
                           CGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAGTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGC                                                                                    <  2:2211061/100‑1
                           CGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGC                                                                                    <  2:864609/100‑1
                            GATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCT                                                                                   <  2:829604/100‑1
                              tctcaGCGATCGAGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCTTA                                                                                 <  1:772855/95‑1
                                  CGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCTTAATAT                                                                             <  1:301918/100‑1
                                                         ATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCA                                                      <  1:2185938/100‑1
                                                                                           GGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGAT                    >  1:2116624/1‑100
                                                                                                   TAAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATA            <  2:503086/100‑1
                                                                                                    AAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATAT           >  2:1396844/1‑100
                                                                                                    AAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAAAGGGGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATAT           >  1:1785958/1‑100
                                                                                                     AGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATC          >  2:756652/1‑100
                                                                                                     AGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATACGCGATCGCGGATATC          >  1:49457/1‑100
                                                                                                       CCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATAaaaa        <  2:317607/100‑5
                                                                                                       CCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGC        >  1:561810/1‑100
                                                                                                          CATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGC     >  2:2443688/1‑100
                                                                                                             GTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGCGTT  <  2:1347142/100‑1
                                                                                                                                                                                                                 
CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1592529‑1592638
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagccgcatgTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGCGTT  <  NC_000913/1592647‑1592549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.