New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1679300 =70 (0.760)13 (0.160) 10/160 NT 16.4% coding (874/945 nt) ydgH DUF1471 family periplasmic protein
?NC_000913 1679340 = 70 (0.850)coding (914/945 nt) ydgH DUF1471 family periplasmic protein

GCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1679407‑1679300
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtaataACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCCCG  >  NC_000913/1679340‑1679437
                                                                                                                                                                                                              
GCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATG                                                                                                            >  1:2073708/1‑100
 CGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGT                                                                                                           <  2:2412498/100‑1
  nGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTG                                                                                                          >  1:2499688/2‑100
  gcCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTAGACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTG                                                                                                          <  2:2264529/98‑1
  GGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTG                                                                                                          <  2:2090123/100‑1
   GCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGG                                                                                                         <  1:652745/100‑1
    CATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGT                                                                                                        <  1:2507481/100‑1
    CATCAAGCCGCCTTATAGGAGTAACTGAAGAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGG                                                                                                         <  1:493875/99‑1
      TCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAA                                                                                                      <  2:1783702/100‑1
       CAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAA                                                                                                      >  2:1575856/1‑99
       CAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCAGGTGATGTGGTAAT                                                                                                     >  1:1570039/1‑100
          GCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGTTCTGCGCTGACGGTCAGGTTCTTACCACGTTTCTGCCACTGGCGGGTGATGTGGTAAn                                                                                                     <  1:402446/97‑2
                                                                AGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCG                                            >  2:2489891/1‑100
                                                                 GGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGG                                           >  2:946495/1‑100
                                                                 GGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGG                                           >  2:710777/1‑100
                                                                   TTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCT                                         >  2:1497712/1‑100
                                                                    TATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTT                                        >  2:847783/1‑100
                                                                    TATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTT                                        <  2:1364708/100‑1
                                                                    TATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTAGAAATAACTATTCAGTTACTCCTATAAGGCGGCTT                                        >  1:1364700/1‑100
                                                                     ATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTG                                       >  1:135253/1‑100
                                                                     ATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTG                                       >  1:1446685/1‑100
                                                                        ACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATG                                    >  2:595382/1‑100
                                                                         CCACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGC                                   >  1:1884914/1‑100
                                                                           ACGTTCCTGCCACTGGCGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCG                                 >  1:1238434/1‑100
                                                                                           CGGGTGATGTGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAG                 <  1:595379/100‑1
                                                                                                    TGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATT        <  2:847203/100‑1
                                                                                                    TGGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATT        >  2:640819/1‑100
                                                                                                     GGTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTT       >  1:918630/1‑100
                                                                                                      GTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTC      >  2:2338101/1‑100
                                                                                                      GTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTC      <  1:2036333/100‑1
                                                                                                      GTAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTC      >  1:959856/1‑100
                                                                                                       TAATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCC     >  2:1069150/1‑100
                                                                                                        AATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCC    >  2:2282567/1‑100
                                                                                                        AATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCC    >  2:2255696/1‑100
                                                                                                         ATAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCCC   <  1:1622790/100‑1
                                                                                                          nAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCCCG  >  1:789124/2‑100
                                                                                                          TAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCCCG  <  1:1800897/100‑1
                                                                                                          TAACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCCCG  >  1:947510/1‑100
                                                                                                                                                                                                              
GCGGCATCAAGCCGCCTTATAGGAGTAACTGAATAGTTATTTATACAGATCTGCGCTGACGGTCAGGTTATTACCACGTTCCTGCCACTGGCGGGTGATGTGGTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1679407‑1679300
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtaataACCTGACCGTCAGCGCAGATCTGTATAAATAACTATTCAGTTACTCCTATAAGGCGGCTTGATGCCGCCTTTCGCATTTTTAGTCACAAATTTCCCCG  >  NC_000913/1679340‑1679437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.