New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2204457	72 (0.790)	14 (0.170)	11/156	NT	17.3%	intergenic (+168/‑139)	yehK/yehL	uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
	?	NC_000913	= 2204480	71 (0.890)					intergenic (+191/‑116)	yehK/yehL	uncharacterized protein/putative hexameric AAA+ MoxR family ATPase

ATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2204348‑2204457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaaataaaaAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGG  <  NC_000913/2204480‑2204383                                                                                                                                                                                                                  ATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATA                                                                                                              <  1:979251/100‑1  TAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCCCAGGCTGTGGTGTTAGGCCTGAAAATAG                                                                                                             >  2:2225841/1‑100  TAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAG                                                                                                             <  2:405705/100‑1  TAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAG                                                                                                             <  1:1907772/100‑1   AAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGT                                                                                                            <  2:2002343/100‑1    AATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTA                                                                                                           >  2:2072254/1‑100     ATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAA                                                                                                          >  1:1123173/1‑100     ATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTA                                                                                                           >  1:1125021/1‑99          ATTATCTTAATTGCACCGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAA                                                                                                     <  2:2555296/100‑1           TTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAA                                                                                                    >  2:1057633/1‑100           TTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAA                                                                                                    <  1:176615/100‑1                       CAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGT                                                                                        >  2:1073881/1‑100                                     CGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTT                                                                          <  2:2443269/100‑1                                       TGGTTATAATTCGTTCGTTGGAACAAGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTA                                                                        <  1:383163/100‑1                                          TTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTT                                                                     <  1:1003279/100‑1                                              AATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTA                                                                 <  2:324430/100‑1                                               ATTCGTTCGTTGGAACACGATGTTGCACATGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTAC                                                                   <  1:843275/97‑1                                               ATTCGTTCGTTGGAACACAATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTAT                                                                <  1:2261305/100‑1                                                TTCGTTCGTTGGAACACGATGTTGCACAGTCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTAT                                                                <  1:2294432/99‑1                                                TTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATT                                                               <  2:76605/100‑1                                                 TCGTTCGTTGGAACAAGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTAT                                                                <  1:905413/98‑1                                                    TTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCA                                                           <  1:948364/100‑1                                                    TTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCA                                                           <  1:1073877/100‑1                                                      CGTGGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGG                                                         <  1:2592774/100‑1                                                                                     GTTAGGCCTGAAAATAGTAAATAAAAAATCCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTT                          <  2:684676/100‑1                                                                                               AAAATAGGAAATAAAAAAGCCTTCTTGTTATGCAGGTTCTTTTATTTACTAGTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACG                <  2:1120425/100‑1                                                                                                     GTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTAT          >  2:290356/1‑100                                                                                                      TAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATA         >  2:2365631/1‑100                                                                                                       AAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATca        <  2:1759650/100‑3                                                                                                       AAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAA        >  1:1538820/1‑100                                                                                                        AATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATTGTGTTCCAACGAACGAATTATAAC       >  1:2322268/1‑100                                                                                                         ATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACC      <  1:1027136/100‑1                                                                                                         ATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACC      >  1:2523297/1‑100                                                                                                         ATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACC      >  2:1698934/1‑100                                                                                                          TAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCA     <  2:1468500/100‑1                                                                                                          TAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCA     >  2:625231/1‑100                                                                                                          TAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCA     >  2:136890/1‑100                                                                                                           AAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCAC    <  2:1417373/100‑1                                                                                                             AAAAACCTGCTGGCGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGGGCAACATCGTGTTCCAACGAACGAATTATCACCACGG  <  1:1203489/100‑1                                                                                                                                                                                                                  ATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2204348‑2204457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaaataaaaAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGG  <  NC_000913/2204480‑2204383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.