| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3984294 | NA (NA) | 4 (0.050) | 4/170 | NT | NA | noncoding (75/104 nt) | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3984320 | NA (NA) | noncoding (101/104 nt) | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3984197‑3984294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA < NC_000913/3984320‑3984218 TCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGG < 1:2537170/100‑1TCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTAGCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGG < 2:941867/100‑1 GGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGAT < 2:376962/100‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATCCAG < 1:221289/100‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATCCAGCC < 1:415648/100‑1 TGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCCTTCTGGAGGCTGGATGCGATGCTGACGCATCTTATCCAGCCT < 1:229704/100‑1 AAACGTCTTATCCGGCCTACGTGGTCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATGTTATTCAGCTTACAGAAC < 1:2056234/99‑1 GGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACTCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGG < 2:1205482/100‑1 GGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATGCGGCGTAAACGCCTTATCCGG < 2:2239387/100‑1 GGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGG < 2:515532/100‑1 GATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC < 1:997397/100‑1 GATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC < 2:1368449/100‑1 TGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA > 2:2359494/1‑100 TGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA < 2:911883/100‑1 TCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3984197‑3984294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGATGCTGACGCATCTTATCCAGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA < NC_000913/3984320‑3984218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |