New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4323250 =	NA (NA)	7 (0.080)	7/164	NT	NA	noncoding (5/87 nt)	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4323280 =	NA (NA)					noncoding (35/87 nt)	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences

TGAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4323355‑4323250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCG  >  NC_000913/4323280‑4323378                                                                                                                                                                                                               TGAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTA                                                                                                           <  2:1970262/100‑1    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                        >  1:2502452/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                        >  2:1790717/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                        >  2:2208215/1‑100    GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                        >  2:1919755/1‑100      AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGG                                                                                                      <  2:881916/100‑1      AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATAAGGTGCTTGCACCGCATCCGG                                                                                                      <  1:888685/100‑1       nAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC                                                                                                     >  2:2475421/2‑100                                    AGACGCCCCGGCGTCGCATCCGACAATGTGCCGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGAACATTGTCGGATGCGAC                                                                        >  2:428682/1‑100                                                                    GGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACT                                        >  2:1865718/1‑100                                                                       GTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCA                                     >  1:386483/1‑100                                                                        TTGATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAC                                    >  2:977723/1‑100                                                                           ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGC                                 >  1:1939938/1‑100                                                                             gctGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGAACATTGTCGGATGCGACGCAGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT                               >  1:1409634/4‑100                                                                             GCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT                               >  2:1280065/1‑100                                                                                                    ATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTT        >  2:1910589/1‑100                                                                                                     nCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTA       >  2:576995/2‑100                                                                                                      CCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAG      >  1:500819/1‑100                                                                                                        GGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCG    >  1:2156390/1‑100                                                                                                          CATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCG  >  2:213225/1‑100                                                                                                                                                                                                               TGAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4323355‑4323250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCG  >  NC_000913/4323280‑4323378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.