| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4549778 = | NA (NA) | 7 (0.080) | 6/174 | NT | NA | intergenic (+68/+175) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | NC_000913 | 4549830 = | NA (NA) | intergenic (+120/+123) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4549875‑4549778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCC > NC_000913/4549830‑4549930 ccggaGGGGCGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGC < 1:684785/95‑1CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATGTGGCCT‑‑ACAAAGGGC > 2:2549800/1‑100CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGC > 1:1322897/1‑100CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGC > 1:673389/1‑100CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGC < 1:983974/100‑1CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGC < 1:984632/100‑1CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGC > 2:1563842/1‑100 AAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCC > 1:1316376/1‑100 AGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGG > 1:422738/1‑100 GCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGCACTTTGCTGGGCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGG > 1:1944223/1‑100 GCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGG > 2:2476128/1‑100 TTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGG > 2:2341396/1‑100 GCCAGATGCGACGCTGACGCGTCTTATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTCACCCTCTCCCCGGAGGGGCGAGGGGAC > 2:2383799/1‑100 GCCAGATGCGACGCTGACGCGTCTTATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGAC > 2:1720849/1‑100 GCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCCCCCCGGCGGGGCGAGGGGACTGTCCGGGCACATTTTTAGCCTTTGTCATCAGTGTGAGac > 1:1611508/1‑95 CACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGTGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCC < 1:1897994/100‑1 CCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCT‑‑ACAAAGGgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4549875‑4549778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCC > NC_000913/4549830‑4549930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |