| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4569947 = | NA (NA) | 16 (0.190) | 11/166 | NT | NA | noncoding (2/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4569970 = | NA (NA) | noncoding (25/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4570050‑4569947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAA > NC_000913/4569970‑4570068 GTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCAT > 2:1468849/1‑100 ATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG < 2:2035575/100‑1 ATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG > 1:2517356/1‑100 gtgTACAAATATCTTTAAAATTCAATTTATTTAATGGGTTATGTAAACCTGATAATCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACT < 1:442988/96‑1 TATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGC > 1:157467/1‑100 ttccgatctTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACA < 2:967864/91‑1 GGTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATG < 2:157468/100‑1 GGTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATG > 1:1017268/1‑100 GTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCAATAAATATATTGAACTTTAAAGATTTTTTGTATACCTGGTCAGGAGTTCACAT > 1:902710/1‑99 TATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCA > 2:2020329/1‑100 GTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TATTCGTAGACCTGGTCAGGCGTTCACATGGCATac > 2:1126913/1‑98 TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACAagatcggaa > 1:967861/1‑91 TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCG > 2:943005/1‑100 TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCG > 2:1621714/1‑100 TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTAGTCAGGCGTTCACATGGCATC > 1:1133841/1‑98 AGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGG > 1:2216323/1‑100 gCCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCA > 1:1941532/2‑100 ACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCA > 1:1433311/1‑100 CCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCAT > 1:867648/1‑100 TCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGC < 1:1850479/100‑1 TCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGC > 1:467326/1‑100 TCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGCTCACATGGCATCCGGCATGAACAAAGCGTACTTTGC < 1:353372/100‑1 CAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCT > 1:293003/1‑100 AGGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTT > 2:540710/1‑100 GGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA > 2:1671535/1‑100 GGTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA > 2:954628/1‑100 GTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAA > 2:881154/1‑100 GTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4570050‑4569947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGA‑TTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAA > NC_000913/4569970‑4570068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |