New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4587871 =	NA (NA)	16 (0.190)	9/162	NT	NA	intergenic (+8/+38)	mrr/yjiA	methylated adenine and cytosine restriction protein/metal‑binding GTPase
	?	NC_000913	4587900 =	NA (NA)					intergenic (+37/+9)	mrr/yjiA	methylated adenine and cytosine restriction protein/metal‑binding GTPase

TGGTGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4587976‑4587871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggccCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCATC  >  NC_000913/4587900‑4587998                                                                                                                                                                                                               TGGTGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCAT                                                                                                           <  2:1714931/100‑1   GTGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCC                                                                                                         >  1:2035926/1‑100    TGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCG                                                                                                        >  1:2069468/1‑100    TGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCG                                                                                                        >  2:1281227/1‑100     GTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGG                                                                                                       >  2:570132/1‑100      TTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                                      <  1:127887/100‑1      TTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                                      >  1:2030890/1‑100       TTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCC                                                                                                     <  2:2302689/100‑1        TATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGTCCGGATAAGGCGCAGCCGCATCCGGC                                                                                                      >  1:488979/1‑98                                                           GAGGAAGTAAGGGGGTATGGGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCC                                                 >  2:1631140/1‑100                                                                       GGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGCATC                                     >  1:1730958/1‑100                                                                          TATGGGCCGGATAAGGCGCAGCCGCATCCGGCCTATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCG                                  >  2:2312158/1‑100                                                                            TGGGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGAT                                >  1:2588328/1‑100                                                                            TGGGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCACGAATCTCTTCCTCCGGCAGCTGGACCCCGAT                                >  1:2588192/1‑100                                                                              GGCCGGATAAGGCGCAGCGGCATCCGGCACATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCcaca                               >  1:2237774/1‑95                                                                              GGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAA                              >  1:1146058/1‑100                                                                               GCCGGATAAGGCGCAGCCGCATCCGGCCTATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAA                             >  2:2016777/1‑100                                                                               GCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCGTTACTTCCTCAACCCCGCACACGCAGCCCGAATCTCTTCCTCCGACAGCTGCATCCCGATAAA                             >  1:1057208/1‑100                                                                               GCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAA                             >  1:858223/1‑100                                                                               GCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAA                             >  2:1155093/1‑100                                                                               GCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAA                             >  2:1392856/1‑100                                                                                CCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGCTAAA                             >  1:1222299/1‑99                                                                                  GGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACAC                          >  2:1826608/1‑100                                                                                  GGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACAC                          >  1:1945662/1‑100                                                                                   GATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACA                           <  2:1730967/98‑1                                                                                            gcGCCGGATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTGCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGC                  <  1:2298446/96‑1                                                                                               cctCATCCTGCCCATAACCACTTACTTCATCAACCCCGCAAACGCAGCCCGAATCTGTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGC             <  1:2511974/97‑1                                                                                                    TCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTT        <  2:872408/100‑1                                                                                                    TCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTT        >  1:872405/1‑100                                                                                                     CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATACACACCATCGTGCTATGCGGTTTT       >  1:630310/1‑100                                                                                                     CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTT       >  2:270819/1‑100                                                                                                     CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTT       <  2:1040131/100‑1                                                                                                       GGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTC     <  1:2494169/100‑1                                                                                                        GCCCATGAACGCTTACTTCCTCAACCTCGCAAACGCAGCCCAAATCTCTTCCGCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCA    <  1:2164969/100‑1                                                                                                        GCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCA    <  1:1392848/100‑1                                                                                                         CCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCAT   <  2:1457315/100‑1                                                                                                          CCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCATC  <  1:1151764/100‑1                                                                                                                                                                                                               TGGTGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4587976‑4587871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggccCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCATC  >  NC_000913/4587900‑4587998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.