New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	72169 =	NA (NA)	8 (0.090)	6/164	NT	NA	noncoding (34/85 nt)	REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3296999 =	NA (NA)					noncoding (1/84 nt)	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences

AGGCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/72266‑72169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTA  >  NC_000913/3296999‑3297034                                                                                                                                        AGGCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGC                                    <  2:1225428/100‑1  GGCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCC                                   >  2:537823/1‑100  GGCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCC                                   <  2:560140/100‑1  GGCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAATATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCC                                   <  2:1820991/100‑1   GCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCT                                  <  2:964547/100‑1    CGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTG                                 >  2:34512/1‑100    CGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTG                                 >  2:793952/1‑100                            TTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATC         <  2:269660/100‑1                              ACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAG       <  1:324779/100‑1                                GGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACTGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGC     <  1:999509/100‑1                                GGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGC     <  2:945654/100‑1                                 GGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC    <  2:400353/100‑1                                  GTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCT   <  2:1034797/100‑1                                  GTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCT   <  2:1201676/100‑1                                    TAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTA  <  1:2176542/99‑1                                                                                                                                        AGGCGAGTGCTTCGGCACTATTGGGGATTACGGGTTAGTATGCACTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGGTAGTGCGTTTTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/72266‑72169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTA  >  NC_000913/3296999‑3297034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.