New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 225721	94 (1.030)	17 (0.190)	5/170	NT	16.8%	intergenic (+146/‑38)	alaV/rrlH	tRNA‑Ala/23S ribosomal RNA of rrnH operon
	?	NC_000913	= 225751	79 (0.900)					intergenic (+176/‑8)	alaV/rrlH	tRNA‑Ala/23S ribosomal RNA of rrnH operon

AAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225619‑225721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAG  <  NC_000913/225751‑225653                                                                                                                                                                                                            AAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATGAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGC                                                                                                        <  1:765722/100‑1  AAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCA                                                                                                       <  2:571300/100‑1  AAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCA                                                                                                       <  1:1948123/100‑1    GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     <  1:1681897/100‑1    GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     <  1:822120/100‑1            GCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACCCGAAGAT                                                                                             >  2:287154/1‑100                           TTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTTCGATTCA                                                                              <  2:2032008/100‑1                                   CTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGTTTCTTACGATTCATCATCG                                                                        <  2:1281427/98‑1                                      GATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAAGATGTTTCTTACGATTCATCATCGTGTTG                                                                   <  2:642612/100‑1                                       ATCAAGGTGAAAATTGAAACACTGATCAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGGAGATGTTTCTTTCGATTCATCATCGTGTTGC                                                                  <  1:2254151/100‑1                                       ATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGCGTCTCTCAAATTTTCGCAACACGAAGATGTTTCTTGCGATCCATCATCGTGTTGC                                                                  <  1:2083945/100‑1                                       ATCAAGCTGAAAATTGAAACACTGAACAACTAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGC                                                                  <  1:2114334/100‑1                                       ATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGC                                                                  <  2:1408424/100‑1                                          AAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAA                                                               <  1:1861497/100‑1                                          AAGCTGAAAATTGAAACACTGAACAACGAGAGGTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCG                                                                 <  1:1088180/98‑1                                             CTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAAT                                                            <  1:532641/100‑1                                             CTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTACGATTCATCATCGTGTTGCGAAAAT                                                            <  1:15989/100‑1                                              TGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATT                                                           <  1:1388862/100‑1                                              TGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACCCGAAGATGTTTCTTACGATTCATCATCGTGTTGCGAAAATT                                                           <  2:1455083/100‑1                                               GAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTT                                                          <  1:1925218/100‑1                                                AAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTG                                                         <  2:2472843/100‑1                                                AAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTG                                                         <  2:434052/100‑1                                                                                                       CCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAG  >  2:1332377/1‑100                                                                                                                                                                                                            AAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225619‑225721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAG  <  NC_000913/225751‑225653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.