New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 409055NA (NA)10 (0.120) 7/164 NT NA noncoding (4/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 409088 NA (NA)noncoding (37/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 128 total aligned reads displayed.

CGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA  >  NC_000913/408956‑409154
                                                                                                   |                                                                                                   
ttccgatctaGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTAc                                                                                                     <  2:1160837/91‑1 (MQ=255)
cGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTAc                                                                                                     <  1:1859816/100‑1 (MQ=255)
cGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTAc                                                                                                     >  2:2036024/1‑100 (MQ=255)
cGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTAc                                                                                                     <  1:1307914/100‑1 (MQ=255)
  tCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgc                                                                                                   >  2:2073207‑M1/1‑98 (MQ=255)
   ccATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgcc                                                                                                  >  1:1270069‑M1/1‑97 (MQ=255)
    cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccg                                                                                                 >  1:1792080‑M1/1‑96 (MQ=255)
    cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccg                                                                                                 <  2:2000997‑M1/100‑5 (MQ=255)
    cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccg                                                                                                 >  1:56157‑M1/1‑96 (MQ=255)
     aTGGAGCGAGTTAGAGCGTAAAACGCATAATGTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCGGGTGTGGCTTCGTACgccgg                                                                                                <  1:1998077‑M1/100‑6 (MQ=255)
     aTGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgg                                                                                                >  2:2515239‑M1/1‑95 (MQ=255)
     aTGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgg                                                                                                >  1:2387616‑M1/1‑95 (MQ=255)
      tGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgga                                                                                               <  1:2586685‑M1/100‑7 (MQ=255)
      tGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgga                                                                                               <  1:1081803‑M1/100‑7 (MQ=255)
        gAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATa                                                                                             <  2:2343794/100‑1 (MQ=255)
         aGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTAcagatcggaa                                                                                            >  1:1160833/1‑91 (MQ=255)
          gCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATaa                                                                                            >  1:298705/1‑99 (MQ=255)
           cAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGa                                                                                          <  2:2421676/100‑1 (MQ=255)
             aGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGAcg                                                                                        >  2:2253442/1‑100 (MQ=255)
              gTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGAcgc                                                                                       >  2:395965/1‑100 (MQ=255)
                tACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCgg                                                                                     >  1:1933470/1‑100 (MQ=255)
                   aGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAg                                                                                  >  2:1394541/1‑100 (MQ=255)
                   aGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAg                                                                                  <  1:967159/100‑1 (MQ=255)
                      gTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGGCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCg                                                                               <  1:487597/100‑1 (MQ=255)
                      gTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCg                                                                               >  2:1628736/1‑100 (MQ=255)
                      gTAAAACGCATAATATTGCTGCGCTAAAAAGTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCg                                                                               <  2:255694/100‑1 (MQ=255)
                         aaaCGCATAATATTGCTGCGCTACAACTTATTGCTCGCCGTAGCGACTAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCg                                                                            <  1:2161059/100‑1 (MQ=255)
                          aaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGc                                                                           >  2:117423/1‑100 (MQ=255)
                             tcaTAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATC                                                                        >  1:202395‑M2/2‑100 (MQ=255)
                             gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatc                                                                        <  1:2496524‑M1/100‑30 (MQ=255)
                             gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATC                                                                        <  2:2009316‑M2/100‑1 (MQ=255)
                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatcc                                                                       <  1:756191‑M1/100‑31 (MQ=255)
                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatcc                                                                       <  2:242701‑M1/100‑31 (MQ=255)
                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCa                                                                       <  2:202397‑M2/100‑2 (MQ=255)
                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCC                                                                       >  1:418102‑M2/1‑100 (MQ=255)
                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCC                                                                       <  1:2057229‑M2/100‑1 (MQ=255)
                                taataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGG                                                                     <  1:1414474‑M2/100‑1 (MQ=255)
                                 aataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggc                                                                    <  2:1105059‑M1/100‑34 (MQ=255)
                                 aataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGC                                                                    >  1:1238207‑M2/1‑100 (MQ=255)
                                 aataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTAGATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGC                                                                    >  1:716905‑M2/1‑100 (MQ=255)
                                  atatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcg                                                                   <  2:672892‑M1/100‑35 (MQ=255)
                                  atatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCg                                                                   >  1:2358507‑M2/1‑99 (MQ=255)
                                   tatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgt                                                                  <  1:1494518‑M1/100‑36 (MQ=255)
                                   tatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAt                                                                  >  1:1332947/1‑100 (MQ=255)
                                    atTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgta                                                                 <  2:2073977‑M1/100‑37 (MQ=255)
                                    atTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgta                                                                 <  1:2215002‑M1/100‑37 (MQ=255)
                                       gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgtacga                                                              <  2:2172561‑M1/100‑40 (MQ=255)
                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  2:2113367/100‑1 (MQ=255)
                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  2:25615/100‑1 (MQ=255)
                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCAGGCATTAAAg                                                             <  1:1806754/100‑1 (MQ=255)
                                         tgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:1982633/99‑1 (MQ=255)
                                         tgcGCTAAAAATTATTGCTCGCCGGAGCGAATAATGATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:801080/99‑1 (MQ=255)
                                          gcgcTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGa                                                           >  1:368060/1‑100 (MQ=255)
                                           cgcTAAAAATTATTGCTCGCGTTAGCCAATAATTATAGGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:2146757/97‑1 (MQ=38)
                                             cTAAAAATTATTGCTCGCCGTAGCGAATAATTATACGCCTGGTGTGGCCTCGTACGCCGGATAAAACGCGGCAGGCGTCGCATCCGGCATTAAAGGa                                                           <  1:632768/97‑1 (MQ=255)
                                              tAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAAt                                                       >  1:1770868/1‑100 (MQ=255)
                                               aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                      >  2:1626331/1‑100 (MQ=255)
                                               aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                      <  1:2356350/100‑1 (MQ=255)
                                                aaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCa                                                     >  2:181933/1‑100 (MQ=255)
                                                 aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                    <  2:371508/100‑1 (MQ=255)
                                                 aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                    <  2:371340/100‑1 (MQ=255)
                                                  aaTTATTGCTCGCCGTCGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                   <  1:1516528/100‑1 (MQ=255)
                                                  aaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                   <  2:2565819/100‑1 (MQ=255)
                                                      attGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAAtt                                               >  1:1431536/1‑100 (MQ=255)
                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        <  2:1489979/100‑1 (MQ=255)
                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        <  2:1817102/100‑1 (MQ=255)
                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        >  1:44517/1‑100 (MQ=255)
                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        <  2:1860534/100‑1 (MQ=255)
                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        >  1:667633/1‑100 (MQ=255)
                                                                 tAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCt                                    >  1:102154/1‑100 (MQ=255)
                                                                   gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                  >  2:868001/1‑100 (MQ=255)
                                                                    cGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCg                                 <  2:222765/100‑1 (MQ=255)
                                                                     gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                >  1:1106104/1‑100 (MQ=255)
                                                                       ataatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCa                              <  1:2036012/100‑1 (MQ=255)
                                                                         aatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCTTCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAcc                            <  1:1436907/100‑1 (MQ=255)
                                                                         aatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAcc                            <  2:58922/100‑1 (MQ=255)
                                                                          atTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCt                           >  2:496191/1‑100 (MQ=255)
                                                                          atTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCCTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTATGCTTCGCCACCt                           >  1:956612/1‑100 (MQ=255)
                                                                            tataTGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCACCACCTaa                         >  1:1229300/1‑100 (MQ=255)
                                                                             atatGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAAt                        <  2:2306262/100‑1 (MQ=255)
                                                                                 gCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCtt                    <  2:70128/100‑1 (MQ=255)
                                                                                 gCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCtt                    <  2:2110011/100‑1 (MQ=255)
                                                                                  ccTGGTGTGGCTTCGTACGCCGGATAAGACGTGGCAGTCGTCGCATCCGGCATTAAAGGAAAATCAGCTAGTAACGGTGTGCTTCGCCACCTAATCCTTc                   <  1:2209343/100‑1 (MQ=38)
                                                                                  ccTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   <  2:1269630/100‑1 (MQ=255)
                                                                                   cTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCa                  <  1:871574/100‑1 (MQ=255)
                                                                                    tGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCaa                 <  1:2584508/100‑1 (MQ=255)
                                                                                       tgtgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCa              >  1:132058/1‑100 (MQ=255)
                                                                                          ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGt           <  2:1259013/100‑1 (MQ=255)
                                                                                          ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGt           >  1:1935097/1‑100 (MQ=255)
                                                                                           gCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtt          >  2:1344079/1‑100 (MQ=255)
                                                                                              tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagc       <  2:2172561‑M2/100‑62 (MQ=255)
                                                                                              tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       <  2:1354449/100‑1 (MQ=255)
                                                                                              tCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg       <  1:821404/100‑1 (MQ=255)
                                                                                               cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGa      <  2:1562238/100‑1 (MQ=255)
                                                                                                gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa     <  1:1044552/100‑1 (MQ=255)
                                                                                                 tACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagcaat    <  1:2215002‑M2/100‑65 (MQ=255)
                                                                                                 tACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAt    >  2:2461041/1‑100 (MQ=255)
                                                                                                  aCGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAtt   >  2:819851/1‑100 (MQ=255)
                                                                                                   cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagcaatat  <  2:2062349‑M2/100‑67 (MQ=255)
                                                                                                   cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagcaatat  <  2:672892‑M2/100‑67 (MQ=255)
                                                                                                   |                                                                                                   
CGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA  >  NC_000913/408956‑409154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.