New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2731304 =31 (0.340)22 (0.260) 5/166 NT 43.2% intergenic (‑147/+296) rrsG/clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
?NC_000913 = 4035360 NA (NA)intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

CACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG  >  NC_000913/2731205‑2731403
                                                                                                   |                                                                                                   
acgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcg                                                                                                     >  1:736543‑M1/100‑100 (MQ=255)
 cgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaagaataaatgcttgactctgtagcgggaacgcgtattatgcacaccccgcgc                                                                                                    <  1:1974551‑M1/2‑1 (MQ=255)
 cgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgc                                                                                                    <  2:1326172‑M1/2‑1 (MQ=255)
 cgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgc                                                                                                    <  2:1337340‑M1/2‑1 (MQ=255)
  gccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgcc                                                                                                   >  2:2028313‑M1/98‑100 (MQ=255)
   ccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgccg                                                                                                  <  1:2452384‑M1/4‑1 (MQ=255)
    cgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgccgc                                                                                                 <  1:1467215‑M1/5‑1 (MQ=255)
     gccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCcgct                                                                                                <  2:831340‑M1/6‑1 (MQ=255)
     gccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaacgcgtattatgcacaccccgcGCcgct                                                                                                <  1:1870849‑M1/6‑1 (MQ=255)
                        cctgagatctccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAgcggcg                                                                             >  1:986902‑M1/76‑100 (MQ=255)
                        cctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAgcggcg                                                                             >  1:1774628‑M1/76‑100 (MQ=255)
                        cctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAgcggcg                                                                             >  1:2382563‑M1/76‑100 (MQ=255)
                        cctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAgcggcg                                                                             >  2:1322126‑M1/76‑100 (MQ=255)
                        cctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAgcggcg                                                                             >  1:2403811‑M1/76‑100 (MQ=255)
                          tgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGcgcg                                                                           >  2:110763‑M1/74‑100 (MQ=255)
                          tgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGcgcg                                                                           >  2:2452401‑M1/74‑100 (MQ=255)
                          tgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGcgcg                                                                           >  1:2143905‑M1/74‑100 (MQ=255)
                          tgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGcgcg                                                                           >  2:2020790‑M1/74‑100 (MQ=255)
                          agagacctccggcagaaaaagcaaaaataaatgcttgactctgtagcgagaaggcgtattatgcacaccccgcGCCACTTCGCTTTTTCTCAGCGGcgcg                                                                           >  1:1789093‑M1/74‑100 (MQ=255)
                           gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgg                                                                          >  2:673386‑M1/73‑100 (MQ=255)
                           gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgg                                                                          >  2:730851‑M1/73‑100 (MQ=255)
                           gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtatgatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgg                                                                          >  1:1736646‑M1/73‑100 (MQ=255)
                           gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCgg                                                                          >  2:22915‑M1/73‑100 (MQ=255)
                           gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCgg                                                                          >  1:399210‑M1/73‑100 (MQ=255)
                            agaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgg                                                                          >  1:1468472‑M1/72‑99 (MQ=255)
                            agaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCggg                                                                         >  1:50697‑M1/72‑100 (MQ=255)
                             gaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgggg                                                                        >  1:954581‑M1/71‑100 (MQ=255)
                             gaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCgggg                                                                        >  2:309696‑M1/71‑100 (MQ=255)
                             gaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCgggg                                                                        >  1:941735‑M1/71‑100 (MQ=255)
                               ttGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTTTTCGGCTCGGCgtg                                                                      >  1:449530/1‑100 (MQ=1)
                                                        cgcgTGCCCACACCGCTTGTCTGATCAACTGCTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTAc                                               <  2:483026/95‑1 (MQ=1)
                                                                       aTTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTcat                              <  2:1759290/100‑3 (MQ=2)
                                                                        ttGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCttt                             <  2:1373540/100‑1 (MQ=17)
                                                                         tGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTg                            <  1:1012704/100‑1 (MQ=18)
                                                                         ggtcatgcgtattatgcacaccccgtGCCGCTTCACGGTTTCTCAGCGGCGTGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTg                            >  1:2388905‑M1/27‑100 (MQ=255)
                                                                          gTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGc                           <  1:384379/100‑1 (MQ=25)
                                                                          gTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGc                           >  2:2133235/1‑100 (MQ=25)
                                                                           tCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt                          <  2:2039152/100‑1 (MQ=255)
                                                                           tCTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGATACAGAGTCAAGCATTTCTTTGCt                          <  1:385642/100‑1 (MQ=255)
                                                                            cTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt                         >  1:2545089/1‑100 (MQ=255)
                                                                            cTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt                         >  1:2099100/1‑100 (MQ=255)
                                                                            cTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt                         >  2:1350484/1‑100 (MQ=255)
                                                                            cTGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt                         >  1:708256/1‑100 (MQ=255)
                                                                             tGATAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGAGGCGAGGGGTGTGCATAATACGCCTTCTCGCTACAGAGTCAAGCCTTTCTTTGCttt                        >  1:1630198/1‑100 (MQ=14)
                                                                                tAAATTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct                     >  2:2519061/1‑100 (MQ=255)
                                                                                  aaTTGTTAAAGAGCAGTGCCACTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct                   <  2:680372/100‑1 (MQ=255)
                                                                                   aTTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                  >  2:2375262/1‑100 (MQ=255)
                                                                                   aTTGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                  >  1:637812/1‑100 (MQ=255)
                                                                                    ttGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                 <  2:756721/100‑1 (MQ=255)
                                                                                     tGTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt                <  2:715012/100‑1 (MQ=255)
                                                                                      gTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATTCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               >  1:564117/1‑100 (MQ=255)
                                                                                      gTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               <  2:637815/100‑1 (MQ=255)
                                                                                      gTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               >  2:2225052/1‑100 (MQ=255)
                                                                                      gTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               <  1:2021714/100‑1 (MQ=255)
                                                                                      gTTAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               <  2:270618/100‑1 (MQ=255)
                                                                                      atgcacaccccgcGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               >  2:740368‑M1/14‑100 (MQ=255)
                                                                                       ttAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCACGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg               >  1:101309/1‑99 (MQ=255)
                                                                                        tAAAGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag             >  2:495745/1‑100 (MQ=255)
                                                                                          aaGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt           <  2:225987/100‑1 (MQ=255)
                                                                                          aaGAGCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt           <  1:1434720/100‑1 (MQ=255)
                                                                                            gagCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc         >  2:1339572/1‑100 (MQ=255)
                                                                                             agCAGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct        <  1:1194935/100‑1 (MQ=255)
                                                                                                aGTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg     <  1:89197/100‑1 (MQ=255)
                                                                                                 gTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg    >  2:2112032/1‑100 (MQ=255)
                                                                                                 gTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg    >  1:1056983/1‑100 (MQ=255)
                                                                                                 gTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg    <  1:1291183/100‑1 (MQ=255)
                                                                                                 gTGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg    <  2:2145913/100‑1 (MQ=255)
                                                                                                  tGCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga   <  2:574366/100‑1 (MQ=255)
                                                                                                   GCCGCTTCACTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag  <  1:2188894‑M1/100‑1 (MQ=255)
                                                                                                   GCCGCTTCACTTTTTCTCAGCGGCGCGGGGAGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag  <  1:393772‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG  >  NC_000913/2731205‑2731403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.