New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2888334 =NA (NA)10 (0.120) 9/164 NT NA noncoding (1/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2888367 = NA (NA)noncoding (34/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 110 total aligned reads displayed.

GCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC  >  NC_000913/2888236‑2888433
                                                                                                  |                                                                                                   
gCGTTAGTTTCCGCCAGCGCCAGAATGCTATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttg                                                                                                     <  1:459933/99‑1 (MQ=255)
gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCCGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    >  1:974415/1‑100 (MQ=255)
gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    >  2:419338/1‑100 (MQ=255)
gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    <  2:2141816/100‑1 (MQ=255)
 cGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgcc                                                                                                   >  2:780293/1‑100 (MQ=255)
 cGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgcc                                                                                                   <  2:693799/100‑1 (MQ=255)
 cGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgcc                                                                                                   <  2:421479/100‑1 (MQ=255)
 cGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgcc                                                                                                   <  2:2520926/100‑1 (MQ=255)
 cGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgcc                                                                                                   <  2:2505120/100‑1 (MQ=255)
 aaggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGcc                                                                                                   >  2:1408290‑M1/98‑100 (MQ=255)
 aaggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGcc                                                                                                   >  2:2118736‑M1/98‑100 (MQ=255)
   ttAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTtgccttgcct                                                                                                  >  2:2542924/1‑99 (MQ=255)
   ggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTg                                                                                                 <  2:866310‑M1/5‑1 (MQ=255)
   ggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTg                                                                                                 >  2:1294573‑M1/96‑100 (MQ=255)
    gcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGa                                                                                                <  1:2048321‑M1/6‑1 (MQ=255)
      gTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATg                                                                                              <  1:780290/100‑1 (MQ=255)
      gTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATg                                                                                              <  1:621714/100‑1 (MQ=255)
       tttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGc                                                                                             >  1:1801323/1‑100 (MQ=255)
       tttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGc                                                                                             <  1:1343462/100‑1 (MQ=255)
          ccGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGAc                                                                                          >  1:1969872/1‑100 (MQ=255)
          ccGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGAc                                                                                          <  2:966734/100‑1 (MQ=255)
                   ccagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCAcgcg                                                                                 <  2:452995/100‑1 (MQ=255)
                   ccagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTACCTTGCCTGATGCGACGCTCAcccg                                                                                 >  1:1072992/1‑100 (MQ=255)
                   ccagAATGCGATCTACCTTCAGCAGATCGTTCAGGGGCTTTAGATAGATTCTGGCCATAGGTTCATCACTTTGTGGCTTGCCTGAGGCGTCTCTCAc                                                                                    >  1:2486316/1‑97 (MQ=255)
                     agAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGtt                                                                               <  2:39559/100‑1 (MQ=255)
                     agAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGtt                                                                               >  2:1173266/1‑100 (MQ=255)
                      gAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTc                                                                              >  2:963084/1‑100 (MQ=255)
                       aaTGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCt                                                                             <  1:1505113/100‑1 (MQ=255)
                        aTGCGATCTACCTTCGGCAGTTCGTTCAGGGCGGTTAGATGGAGTTTGGACATAGATTCGTCACTGTTTGCATTGCATGATGCAACGCTCACGCGTTCtt                                                                            >  1:1176593/1‑100 (MQ=255)
                         tGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTa                                                                           >  1:549763/1‑100 (MQ=255)
                         gtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTa                                                                           >  2:369245‑M1/74‑100 (MQ=255)
                          gCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTAt                                                                          >  2:894126/1‑100 (MQ=255)
                           cGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATc                                                                         <  2:549765/100‑1 (MQ=255)
                           cGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATc                                                                         >  2:2508786/1‑100 (MQ=255)
                           cGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATc                                                                         <  1:297972/100‑1 (MQ=255)
                            gATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCa                                                                        >  2:789028/1‑100 (MQ=255)
                            cgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCa                                                                        >  1:2471017‑M1/71‑100 (MQ=255)
                               gcatcattcgcccggtgctcgatccggcgcgtgatttgggagattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTGCTTATCAGGc                                                                     >  1:1378488‑M1/68‑100 (MQ=255)
                                tACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCGCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                    <  2:1473088/100‑1 (MQ=255)
                                catcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                    >  2:332923‑M1/67‑100 (MQ=255)
                                 atcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                   >  1:1852066‑M1/66‑100 (MQ=255)
                                  tcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                    >  1:1344665‑M1/65‑98 (MQ=255)
                                  tcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTa                                                                  >  1:879256‑M1/65‑100 (MQ=255)
                                   cTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                   >  1:1468784/1‑98 (MQ=255)
                                   cTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTACCTGATGCGACGCTCACGCGTTCTTATCAGGCCTAc                                                                 <  1:2012884/100‑1 (MQ=255)
                                    ttCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACa                                                                >  2:647453/1‑100 (MQ=255)
                                     tCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACaa                                                               <  1:1023470/100‑1 (MQ=255)
                                      tcgcccggtgctcgatccggcgcgtgatgtgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAg                                                              >  2:690290‑M1/61‑100 (MQ=255)
                                      cGGCAGTTCTTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAg                                                              <  2:2216873/100‑1 (MQ=255)
                                       gtcAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGa                                                             >  2:877053/3‑100 (MQ=255)
                                       ggCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGa                                                             <  2:1944656/100‑1 (MQ=255)
                                       cgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGa                                                             >  1:866307‑M1/60‑100 (MQ=255)
                                          aGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCg                                                          <  1:2113271/100‑1 (MQ=255)
                                           cggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCgg                                                         >  2:2400354‑M1/56‑100 (MQ=255)
                                             tcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                       <  1:1081008/100‑1 (MQ=255)
                                             tcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                       <  2:2435112/100‑1 (MQ=255)
                                               gttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTg                                                     >  2:833977/1‑100 (MQ=255)
                                               gttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTg                                                     >  1:2288600/1‑100 (MQ=255)
                                                    gggCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGt                                                >  1:2435445/1‑100 (MQ=255)
                                                    gggCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGt                                                >  2:1099670/1‑100 (MQ=255)
                                                     ggCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGtt                                               <  1:1729658/100‑1 (MQ=255)
                                                      gCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTa                                              <  2:1447865/100‑1 (MQ=255)
                                                        gTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAAt                                            <  2:1046903/100‑1 (MQ=255)
                                                         tttAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGTCTGATGGTTAATc                                           <  2:1742829/100‑1 (MQ=255)
                                                          ttAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATcc                                          <  1:645750/100‑1 (MQ=255)
                                                           tAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCTTTGCCTGATGCGACGCCAACGCGCTCTTATCAGGCCTACAAGCACGGGCTGATGGTTAATccc                                         >  1:1350026/1‑100 (MQ=37)
                                                            aGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCca                                        >  1:2414284/1‑100 (MQ=255)
                                                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       >  1:135218/1‑100 (MQ=255)
                                                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       >  1:1796561/1‑100 (MQ=255)
                                                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       <  1:550269/100‑1 (MQ=255)
                                                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       >  2:604019/1‑100 (MQ=255)
                                                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       <  2:135219/100‑1 (MQ=255)
                                                              aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcaca                                      >  1:974191/1‑100 (MQ=255)
                                                              aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcaca                                      <  2:2011265/100‑1 (MQ=255)
                                                              aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcaca                                      <  2:477092/100‑1 (MQ=255)
                                                               tCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACaa                                     >  2:1505055/1‑100 (MQ=255)
                                                                   gTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCa                                 <  1:152906/100‑1 (MQ=255)
                                                                     ttGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcg                               <  1:1954218/100‑1 (MQ=255)
                                                                       ggACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcgcg                             >  2:2568801/1‑100 (MQ=255)
                                                                        gACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACgcgc                            >  2:2496769/1‑100 (MQ=255)
                                                                            tAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCg                          >  1:2014453/1‑98 (MQ=255)
                                                                            tAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGa                        >  2:185281/1‑100 (MQ=255)
                                                                              gATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATc                      >  1:566233/1‑100 (MQ=255)
                                                                               aTTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTGATCCCACAAATCACGCGCCGGATCg                     <  1:877050/100‑1 (MQ=255)
                                                                                ttCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCg                     <  2:2503/99‑1 (MQ=255)
                                                                                   cTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGc                  <  1:2234907/99‑1 (MQ=255)
                                                                                    tCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCAc                <  2:1494279/100‑1 (MQ=255)
                                                                                         gTTTGCCTTGCCTGATTCTATGCTCACGCTTTGTTATCCGCCGAACTATACAGAGCGCCTCGCTATTCCCATAAATCACGCGCCTGATCGATCACCGGGc           <  1:2291634/100‑1 (MQ=255)
                                                                                         gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc           <  1:1478098/100‑1 (MQ=255)
                                                                                         gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc           <  2:2353935/100‑1 (MQ=255)
                                                                                            tgccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACCAGACCGGGCCGATGGTTCATCCCACAAACCACCCGCCGGATCGCGCCCCg              >  1:2320142/1‑94 (MQ=25)
                                                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat       >  2:1625087/1‑100 (MQ=255)
                                                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat       <  2:2539209/100‑1 (MQ=255)
                                                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat       <  1:1832592/100‑1 (MQ=255)
                                                                                              ccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatg      >  2:2578010/1‑100 (MQ=255)
                                                                                               cttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatga     >  1:1006410/1‑100 (MQ=255)
                                                                                                ttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatgat    <  2:1457977/100‑1 (MQ=255)
                                                                                                 tgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatgatg   <  1:2510428/100‑1 (MQ=255)
                                                                                                  GCCTGATGCGACGCTCGCGCGTTCTTATCAGGCCTACAAGACCGGTCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGc  >  1:176058‑M1/1‑100 (MQ=255)
                                                                                                  GCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatgatg   >  2:2352184‑M1/1‑99 (MQ=255)
                                                                                                  |                                                                                                   
GCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC  >  NC_000913/2888236‑2888433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.