BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3296999 =	NA (NA)	13 (0.150)	7/164	NT	NA	noncoding (1/84 nt)	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	3297032 =	NA (NA)	13 (0.150)	7/164	NT	NA	noncoding (34/84 nt)	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 145 total aligned reads displayed.

ACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAA  >  NC_000913/3296900‑3297096

aCGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATg                                                                                                   <  1:890090/100‑1 (MQ=255)

 cGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGc                                                                                                  >  2:2132776/1‑100 (MQ=255)

 aggcgagtgcttcggcactattggggattacgggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGc                                                                                                  <  2:1225428‑M2/2‑1 (MQ=255)

  ggcgagtgcttcggcactattggggattacgggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGcc                                                                                                 <  2:560140‑M2/3‑1 (MQ=255)

  ggcgagtgcttcggcactattggggattacgggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGcc                                                                                                 >  2:537823‑M2/98‑100 (MQ=255)

  ggcgagtgcttcggcactattggggattacgggttaatatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGcc                                                                                                 <  2:1820991‑M2/3‑1 (MQ=255)

  gattgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGcc                                                                                                 <  1:1333278‑M1/3‑1 (MQ=255)

  gattgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGcc                                                                                                 >  2:2293153‑M1/98‑100 (MQ=255)

  gTGAAGCGAGAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                 <  1:21282/100‑1 (MQ=255)

  gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGTTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                 >  2:1399163/1‑100 (MQ=255)

  gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                 <  1:1024204/100‑1 (MQ=255)

  gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                 <  2:501815/100‑1 (MQ=255)

   attgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCt                                                                                                <  2:298979‑M1/4‑1 (MQ=255)

    ttgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTg                                                                                               <  1:869476‑M1/5‑1 (MQ=255)

    cgagtgcttcggcactattggggattacgggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTg                                                                                               >  2:793952‑M2/96‑100 (MQ=255)

     tgtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGa                                                                                              >  2:1786562‑M1/95‑100 (MQ=255)

     aaGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGa                                                                                              <  2:1700504/100‑1 (MQ=255)

      gtcggcgggctggcgctgttgttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGAt                                                                                             <  1:1501537‑M1/7‑1 (MQ=255)

      aGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGAt                                                                                             >  1:1689081/1‑100 (MQ=255)

      aGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGAt                                                                                             <  1:2438268/100‑1 (MQ=255)

       gCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATg                                                                                            <  2:2088805/100‑1 (MQ=255)

         gAAAGCGGCGGCAGATATTGCCAGCCGAGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGc                                                                                           <  2:1063442/99‑1 (MQ=255)

           aaGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGAc                                                                                        >  2:1964447/1‑100 (MQ=255)

           aaGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGAc                                                                                        >  1:2357201/1‑100 (MQ=255)

               ggcggcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCtt                                                                                    <  1:1001668/100‑1 (MQ=255)

                  ggcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGcc                                                                                 <  1:682911/100‑1 (MQ=255)

                  ggcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGATTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGcc                                                                                 >  1:678511/1‑100 (MQ=255)

                     aGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcgcg                                                                              <  1:2582028/100‑1 (MQ=255)

                      gATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGGTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGt                                                                             >  1:202969/1‑100 (MQ=255)

                       atatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTc                                                                            <  2:952067/100‑1 (MQ=255)

                       atatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTc                                                                            <  2:1782910/100‑1 (MQ=255)

                        tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                           <  1:572306/100‑1 (MQ=255)

                        tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCt                                                                           >  2:2131297/1‑100 (MQ=255)

                         atTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                          >  2:1973611/1‑100 (MQ=255)

                          ttGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTa                                                                         >  2:2570672/1‑100 (MQ=255)

                           ttctgatttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtatGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                        <  1:2507825‑M1/28‑1 (MQ=255)

                            ttacgggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                       <  2:269660‑M2/29‑1 (MQ=255)

                            gCCAGCCGCGTGAGCCGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                        <  2:2239075/99‑1 (MQ=255)

                              cAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                     <  2:1015230/100‑1 (MQ=255)

                              acgggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                     <  1:324779‑M2/31‑1 (MQ=255)

                                gggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                   <  2:945654‑M2/33‑1 (MQ=255)

                                atttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                   >  2:90295‑M1/68‑100 (MQ=255)

                                atttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATAAGACGCTTGCCGCGTCTTATCAGGc                                                                   >  2:2019682‑M1/68‑100 (MQ=255)

                                atttgagggaaaacatgtcggatgcggcgtaaacgccttagctggcctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                   >  1:1816294‑M1/68‑100 (MQ=255)

                                 tttgagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                  >  1:411223‑M1/67‑100 (MQ=255)

                                 ggttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                  <  2:400353‑M2/34‑1 (MQ=255)

                                 ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                  <  1:192276/100‑1 (MQ=255)

                                 ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                  <  1:1880568/100‑1 (MQ=255)

                                  gttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                 <  2:1034797‑M2/35‑1 (MQ=255)

                                  gttagtatgcactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                 <  2:1201676‑M2/35‑1 (MQ=255)

                                   gggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                >  2:1271476/1‑100 (MQ=255)

                                   gggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                >  2:793931/1‑100 (MQ=255)

                                    ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                               <  2:368617/100‑1 (MQ=255)

                                    agggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                               >  2:2407790‑M1/64‑100 (MQ=255)

                                      tGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaa                                                             >  2:2582949/1‑100 (MQ=255)

                                       ggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                            >  2:2507844‑M1/61‑100 (MQ=255)

                                       ggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                            >  1:1278854‑M1/61‑100 (MQ=255)

                                       ggaaaacatgtcggaggcggcgtaaacgccttatctgacctacggtttgtatcgttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                            >  2:1783111‑M1/61‑100 (MQ=255)

                                       gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                            >  2:1262807/1‑100 (MQ=255)

                                            gcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATAc                                                       <  2:2545006/100‑1 (MQ=255)

                                               tGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTACAACGATACaa                                                     >  1:322677/1‑99 (MQ=255)

                                                tcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                   >  2:1708465‑M1/52‑100 (MQ=255)

                                                gAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGCTACAAAc                                                   >  1:1755635/1‑100 (MQ=255)

                                                gAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                   <  2:420089/100‑1 (MQ=255)

                                                    cGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                               <  2:1935889/100‑1 (MQ=255)

                                                     gggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAg                                              <  2:1420794/100‑1 (MQ=255)

                                                      ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAgg                                             <  1:305905/100‑1 (MQ=255)

                                                      ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAgg                                             <  2:499643/100‑1 (MQ=255)

                                                      ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAgg                                             <  2:208453/100‑1 (MQ=255)

                                                      ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAgg                                             >  2:2290161/1‑100 (MQ=255)

                                                        tAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                           >  1:1166340/1‑100 (MQ=255)

                                                        tAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                           <  2:1565272/100‑1 (MQ=255)

                                                           cTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                        >  2:1489823/1‑100 (MQ=255)

                                                            tattgcttttacgtttaTTAAATAGCAGCTCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAg                                         <  1:875160/91‑1 (MQ=255)

                                                             aCGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATa                                      >  2:393116/1‑100 (MQ=255)

                                                                gCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAgg                                   <  1:286820/100‑1 (MQ=255)

                                                                 cgtttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAg                                    <  1:333155/98‑1 (MQ=255)

                                                                     tacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGttt                              <  1:684080/100‑1 (MQ=255)

                                                                     tacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGttt                              <  1:8522/100‑1 (MQ=255)

                                                                        gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcg                           <  2:2227239/100‑1 (MQ=255)

                                                                        gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcg                           <  2:1914477/100‑1 (MQ=255)

                                                                             ntaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCa                      >  2:1848143/2‑100 (MQ=255)

                                                                                  tAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGa                 <  1:2225437/100‑1 (MQ=255)

                                                                                   agcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGAc                <  2:1911199/100‑1 (MQ=255)

                                                                                   agcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGAc                >  1:1889370/1‑100 (MQ=255)

                                                                                   agcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGAc                <  2:2561053/100‑1 (MQ=255)

                                                                                   agcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGAc                >  2:1810985/1‑100 (MQ=255)

                                                                                   agcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGAc                >  2:328019/1‑100 (MQ=255)

                                                                                    gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa               <  1:44263/100‑1 (MQ=255)

                                                                                     catccccTTGTAATGCCTGATGCTACGCTTTCCGCGTCTTATCAGGCCTACACCGATACAAACCTTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAt              <  1:504091/97‑1 (MQ=25)

                                                                                      agcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATg             <  1:1484235/100‑1 (MQ=255)

                                                                                       gcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt            >  2:1890216/1‑100 (MQ=255)

                                                                                         cccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGttt          >  2:1574398/1‑100 (MQ=255)

                                                                                         cccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGttt          >  1:1847418/1‑100 (MQ=255)

                                                                                           cTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTc        <  1:221554/100‑1 (MQ=255)

                                                                                             tGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc      <  2:912138/100‑1 (MQ=255)

                                                                                               tAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTc    >  2:499806/1‑100 (MQ=255)

                                                                                                aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa   >  1:2372619/1‑100 (MQ=255)

                                                                                                aaTGCCTGATGCGACGCGTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTATACGCCGCATCCGACATGGCTTccc      >  1:347050/1‑97 (MQ=21)

                                                                                                aaTGCCTGATGCGACACTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa   <  2:2140252/100‑1 (MQ=255)

ACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAA  >  NC_000913/3296900‑3297096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.