| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3428468 = | 4 (0.040) | 38 (0.450) | 8/164 | NT | 91.2% | noncoding (295/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4035834 | NA (NA) | noncoding (304/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
CTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCCTCTT > NC_000913/3428369‑3428567 | ccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatg > 1:418410‑M1/100‑100 (MQ=255)ccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatg > 2:1304061‑M1/100‑100 (MQ=255)ccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatg > 2:1173884‑M1/100‑100 (MQ=255)ccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatg < 2:1967748‑M1/1‑1 (MQ=255)ccttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatg > 2:19187‑M1/100‑100 (MQ=255)ccttcgggcctcttgccatcggatgtgcccagacaggcttagttagtaggtggggtaacggctcacgtaggcgacgatccctagctggtctgagaggatg < 1:872815‑M1/1‑1 (MQ=255) cttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatg > 2:213637‑M1/99‑99 (MQ=255) cttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGa < 2:1353225‑M1/2‑1 (MQ=255) cttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGa < 2:81364‑M1/2‑1 (MQ=255) cttcgggcctcttgccatcggatgtgcccagatgggattagctagtagggggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGa < 2:1759027‑M1/2‑1 (MQ=255) cttcgggcctcttgccatcggatgtgcccagatgggagtagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGa < 1:1383926‑M1/2‑1 (MQ=255) ttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGAc > 2:1583001‑M1/98‑100 (MQ=255) ttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGAc > 2:2449456‑M1/98‑100 (MQ=255) ttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGAc < 2:868281‑M1/3‑1 (MQ=255) ttcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGAc > 2:1644933‑M1/98‑100 (MQ=255) tcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGAcc > 1:1970000‑M1/97‑100 (MQ=255) tcgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGAcc > 1:1329649‑M1/97‑100 (MQ=255) cgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCa < 2:1173799‑M1/5‑1 (MQ=255) cgggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCa > 1:632792‑M1/96‑100 (MQ=255) cgggcctcttgccatcggatgtgcacagatgggattagctagtaggtggggtaacggctcacatagacgacgatccctagctggtctgagaggatGACCa < 1:1882618‑M1/5‑1 (MQ=255) gggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAg > 2:1950349‑M1/95‑100 (MQ=255) gggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAg < 2:806114‑M1/6‑1 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAGc < 2:2572291‑M1/7‑1 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAGc > 1:291492‑M1/94‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAGc < 1:1290440‑M1/7‑1 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAGc > 1:1856890‑M1/94‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatGACCAGc > 2:876867‑M1/94‑100 (MQ=255) ggcctcttgccatcggatgtgcccagatgggattagctagtaggtggggtaacggctcacctaggcaacgatccctagctggtctgagaggatGACCAGc > 1:2290306‑M1/94‑100 (MQ=255) cctaggcgacgatccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGcac < 1:1650375‑M1/66‑1 (MQ=255) ctaggcgacgatccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCGGTTACCCCAACTACTCGCTAATCCAATCTGGGcaca < 1:606472‑M1/67‑1 (MQ=255) gatccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGc < 1:1588705‑M1/76‑1 (MQ=255) gatccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGc < 2:913428‑M1/76‑1 (MQ=255) ccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAag < 1:951089‑M1/79‑1 (MQ=255) ccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAag < 2:830651‑M1/79‑1 (MQ=255) ccctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAag < 1:1015181‑M1/79‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACACGCTAATCCCATCTGGGCCCATCCGATGGCAaga < 1:2344456‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 1:2322202‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 2:889118‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 2:134438‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAaga < 2:1440497‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAaga < 2:1867329‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAaga < 1:11244‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAag < 2:1399892‑M1/79‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 2:1349744‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 1:2031336‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 1:95991‑M1/80‑1 (MQ=255) cctagctggtctgagaggatGACCAGCCAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAaga < 2:409575‑M1/80‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 1:1972865‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 2:2207416‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 2:2129448‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCACATCTGGGCACATCCGATGGCAaga < 1:469447‑M1/80‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAagag < 2:1060703‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 2:133802‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 2:282543‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 2:182430‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAagag < 2:2023709‑M1/81‑1 (MQ=255) ctagctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAag < 2:1607971‑M1/79‑1 (MQ=255) agctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGc < 2:92349‑M1/83‑1 (MQ=255) gctggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc < 2:109802‑M1/84‑1 (MQ=255) gctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTATCTAATCCCATCTGGGCACATCTGATGGCAAGAGGcc < 2:1819030‑M1/84‑1 (MQ=255) gctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGcc < 2:662800‑M1/84‑1 (MQ=255) gctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc < 1:1233031‑M1/84‑1 (MQ=255) gctggtctgagaggatGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCAACTGGGCACATCCGATGGCAAGAGGcc < 1:2307416‑M1/84‑1 (MQ=255) ggtctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGa < 2:2077444‑M1/87‑1 (MQ=255) ctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAggg < 2:1629554‑M1/90‑1 (MQ=255) ctgagaggatGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAggg > 1:2077430‑M1/11‑100 (MQ=255) cATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAggg > 1:2438504/1‑100 (MQ=32) ccTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTcc > 2:2176998/1‑100 (MQ=33) ccTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTcc < 2:975983/100‑1 (MQ=33) ctctCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTccc > 2:223964/1‑100 (MQ=33) tctcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTcccc > 1:2212228/1‑100 (MQ=32) ctcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATAGCAAGAGGCCCGAGGGTccccc < 2:980802/100‑1 (MQ=18) tcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTccccc < 2:516448/99‑1 (MQ=32) naGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCctc > 1:928609/2‑100 (MQ=17) cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCctc > 2:1421836/1‑100 (MQ=33) cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCctc > 1:683826/1‑100 (MQ=33) cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCctc > 1:80300/1‑100 (MQ=32) aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCctct > 1:1511632/1‑100 (MQ=32) GACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCCTCtt < 2:840737‑M1/100‑1 (MQ=255) | CTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAGGGTCCCCCTCTT > NC_000913/3428369‑3428567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |