New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3765506	0 (0.000)	6 (0.070)	6/170	NT	100%	coding (3324/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
	?	NC_000913	= 3765524	NA (NA)					coding (3342/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor

GATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGA  >  NC_000913/3765408‑3765605                                                                                                   |                                                                                                    gATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCT                                                                                                     <  1:1733913‑M1/99‑1 (MQ=255)   tGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc                                                                                                  >  2:1376849/1‑100 (MQ=32)   tGCGCTACAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGCGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc                                                                                                  >  1:124664/1‑100 (MQ=12)    gcgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc                                                                                                 >  2:506582/1‑100 (MQ=32)    gcgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc                                                                                                 >  1:405917/1‑100 (MQ=32)    gcgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc                                                                                                  <  1:593191/99‑1 (MQ=32)     cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg                                                                                                <  2:1538428/100‑1 (MQ=31)     cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg                                                                                                >  2:428295/1‑100 (MQ=31)     cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg                                                                                                >  2:532187/1‑100 (MQ=31)                        cgAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccag                                                                             <  2:2079760‑M1/100‑25 (MQ=255)                         gAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccagg                                                                            <  2:163716‑M1/100‑26 (MQ=255)                           aGATGGTGGCAGTGTGGTGTTCCGGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccagga                                                                           <  1:2106670‑M1/99‑27 (MQ=255)                            gACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTtgcctcactcacccggtcagccaggatt                                                                         <  1:2193572‑M1/100‑29 (MQ=255)                             aCGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccaggattt                                                                        <  2:612493‑M1/100‑30 (MQ=255)                                  ggCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccaggatttcactt                                                                   <  1:1281399‑M1/100‑35 (MQ=255)                                                                                                ggCTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgcc     >  2:1523186‑M1/1‑4 (MQ=255)                                                                                                 gCTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccg    >  1:2083417‑M1/1‑3 (MQ=255)                                                                                                 gCTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccg    <  1:1256817‑M1/100‑98 (MQ=255)                                                                                                  cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgc   >  2:972516‑M1/1‑2 (MQ=255)                                                                                                  cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgc   >  1:2434027‑M1/1‑2 (MQ=255)                                                                                                   tttcctcactcgcccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccg    <  1:2483714‑M1/98‑98 (MQ=255)                                                                                                   tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc  <  2:1777588‑M1/100‑100 (MQ=255)                                                                                                   tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc  >  2:453815‑M1/1‑1 (MQ=255)                                                                                                   tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc  <  1:441310‑M1/100‑100 (MQ=255)                                                                                                   tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc  <  1:1482993‑M1/100‑100 (MQ=255)                                                                                                   tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtctacgccgcc  <  2:1363803‑M1/100‑100 (MQ=255)                                                                                                   |                                                                                                    GATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGA  >  NC_000913/3765408‑3765605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.