New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4332016NA (NA)7 (0.090) 6/160 NT NA noncoding (3/32 nt) REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4332045 NA (NA)noncoding (32/32 nt) REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 135 total aligned reads displayed.

AAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCA  >  NC_000913/4331919‑4332115
                                                                                                 |                                                                                                     
aaaTCGATGATAGTGACCACGGGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATgg                                                                                                     <  1:2103827‑M1/100‑3 (MQ=255)
 aaTCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggc                                                                                                    <  1:383720‑M1/100‑4 (MQ=255)
  aTCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcc                                                                                                   <  1:1062932‑M1/100‑5 (MQ=255)
  aTCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcc                                                                                                   <  1:676763‑M1/100‑5 (MQ=255)
  aTCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcc                                                                                                   <  1:1308589‑M1/100‑5 (MQ=255)
   tCGATCATACTCACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcct                                                                                                  <  1:2158297‑M1/100‑6 (MQ=255)
    cGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctg                                                                                                 >  1:994855‑M1/1‑94 (MQ=255)
    cGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctg                                                                                                 <  2:155907‑M1/100‑7 (MQ=255)
     gatgatATTGACCACGAGCTTGCCGATCTGCAGCCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGCATCGATGCATAAGCTGAAACGGATggcc                                                                                                   >  1:2279790‑M1/1‑93 (MQ=255)
     gatgatATTGACCACGAGATTGCCGATTTGCGGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGCACTGATGAATCAGCTGACACGTATggcctga                                                                                                >  1:613539‑M1/1‑93 (MQ=255)
     gatgatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctga                                                                                                <  2:226091‑M1/100‑8 (MQ=255)
     gatgatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctga                                                                                                <  2:1901301‑M1/100‑8 (MQ=255)
     gatgatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctga                                                                                                >  1:1907718‑M1/1‑93 (MQ=255)
       tgatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAtg                                                                                              <  1:1538036/100‑1 (MQ=255)
        gatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAtgt                                                                                             <  1:204179/100‑1 (MQ=255)
        gatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAtgn                                                                                             <  1:1944791/100‑2 (MQ=255)
         atatTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGAAACATGCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAtgtg                                                                                            >  2:1104490/1‑100 (MQ=255)
          tatTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGa                                                                                           >  2:1094412/1‑100 (MQ=255)
          tatTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGa                                                                                           >  1:1089002/1‑100 (MQ=255)
          tatTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGa                                                                                           >  2:290619/1‑100 (MQ=255)
           atTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGAc                                                                                          <  2:1277197/100‑1 (MQ=255)
             tGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGc                                                                                        <  1:1310185/100‑1 (MQ=255)
             tGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGc                                                                                        <  2:972660/100‑1 (MQ=255)
             tGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGc                                                                                        <  2:1240411/100‑1 (MQ=255)
                ccACGCGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGt                                                                                     >  1:1542574/1‑100 (MQ=255)
                ccACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGt                                                                                     >  2:1591927/1‑100 (MQ=255)
                 cACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGtn                                                                                    <  2:1338850/100‑2 (MQ=255)
                   cGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCtt                                                                                  <  1:256647/100‑1 (MQ=255)
                     agaTTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTAT                                                                                <  1:1512760‑M2/100‑1 (MQ=255)
                        ttGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAG                                                                             <  1:2343879‑M2/100‑1 (MQ=255)
                          gCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctgataagacagcgtcacatcaggc                                                                           <  2:1145858‑M1/100‑29 (MQ=255)
                          gCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGC                                                                           >  2:1372538‑M2/1‑100 (MQ=255)
                          gCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGC                                                                           <  1:505830‑M2/100‑1 (MQ=255)
                           ccGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCC                                                                          <  2:1646788‑M2/100‑1 (MQ=255)
                           ccGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCC                                                                          >  1:1565539‑M2/1‑100 (MQ=255)
                           ccGATTTGCAGGCGAAACGCACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCtagatcggaa                                                                          >  1:138605/1‑91 (MQ=255)
                               tttGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctgataagacagcgtcacatcaggccatcc                                                                      <  2:2517818‑M1/100‑34 (MQ=255)
                               tttGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAAtt                                                                      <  2:2268264/100‑1 (MQ=255)
                                 tGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGa                                                                    >  2:2516780/1‑100 (MQ=255)
                                  gCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGaa                                                                   >  2:377198/1‑100 (MQ=255)
                                   cAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAAc                                                                  <  2:1061099/100‑1 (MQ=255)
                                    aGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAAct                                                                 >  2:846869/1‑100 (MQ=255)
                                    aGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAAct                                                                 <  2:994858/100‑1 (MQ=255)
                                     ggCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAActc                                                                <  2:1001736/100‑1 (MQ=255)
                                     ggCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAActc                                                                >  2:2066584/1‑100 (MQ=255)
                                      gCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAActct                                                               >  2:1064695/1‑100 (MQ=255)
                                          aaCGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAg                                                           >  2:1765500/1‑100 (MQ=255)
                                          aaCGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAg                                                           >  2:1177988/1‑100 (MQ=255)
                                            cGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGt                                                         <  2:1585037/100‑1 (MQ=255)
                                            cGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGt                                                         <  1:1064691/100‑1 (MQ=255)
                                             gTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGtt                                                        >  2:48326/1‑100 (MQ=255)
                                              tACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTc                                                       >  2:2180288/1‑100 (MQ=255)
                                              tACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTc                                                       <  1:843536/100‑1 (MQ=255)
                                                cccGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCAc                                                     <  1:1191399/100‑1 (MQ=255)
                                                cccGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCAc                                                     >  2:1592422/1‑100 (MQ=255)
                                                 ccGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACt                                                    >  1:1302473/1‑100 (MQ=255)
                                                  cGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACtt                                                   <  1:1646779/100‑1 (MQ=255)
                                                  cGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACtt                                                   >  1:2505975/1‑100 (MQ=255)
                                                    ccTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTaa                                                 <  1:1591918/100‑1 (MQ=255)
                                                     cTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAATCGGATGGCCTGATGTGACGCTGTCTTATCAGGTTAATTGAACTCTTAAGGTTCACTTa                                                  <  1:866281/98‑1 (MQ=255)
                                                     cTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAt                                                <  1:254890/100‑1 (MQ=255)
                                                     cTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAt                                                >  2:1607746/1‑100 (MQ=255)
                                                     cTGGTGCAGCAACATCCGCAAATTGATGAATAAACTGAAACGGATggcctgataagacagcgtcacatcaggccatccgtttcagcttattcatcaat                                                  <  1:1226567‑M1/98‑54 (MQ=255)
                                                      tGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAtc                                               <  2:1542583/100‑1 (MQ=255)
                                                      tGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAtc                                               >  2:2453133/1‑100 (MQ=255)
                                                      tGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAtc                                               <  1:610342/100‑1 (MQ=255)
                                                      tGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAtc                                               >  2:455397/1‑100 (MQ=255)
                                                      tGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGACCAATTGAACTCTTAAGGTTCACTTAAtc                                               >  2:42711/1‑100 (MQ=255)
                                                             gcaACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGAcg                                        >  1:266779/1‑100 (MQ=255)
                                                              caACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGAcgc                                       <  2:725993/100‑1 (MQ=255)
                                                                 cATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCa                                    <  2:2426718/100‑1 (MQ=255)
                                                                  aTCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCAt                                   >  1:332742/1‑100 (MQ=255)
                                                                   tCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATa                                  >  1:1470692/1‑100 (MQ=255)
                                                                    ccGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATAc                                 <  2:907396/100‑1 (MQ=255)
                                                                     cgcgAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATAct                                >  2:2203085/1‑100 (MQ=255)
                                                                      gcgAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActc                               <  1:826328/100‑1 (MQ=255)
                                                                      gcgAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActc                               >  1:160085/1‑100 (MQ=255)
                                                                          aTTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCatccgtttcagtttattcatcaatttgcggatgttgctgcaccag                             <  1:1226567‑M2/98‑46 (MQ=255)
                                                                            tgatgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCtcctcc                         <  2:1871201/100‑1 (MQ=255)
                                                                             gatgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCatccgtttcagcttattcatcaattcgcggatgttgctgcaccaggcggg                        <  2:2149470‑M2/100‑51 (MQ=255)
                                                                              atgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg                       <  2:873085/100‑1 (MQ=255)
                                                                              atgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg                       <  1:2401974/100‑1 (MQ=255)
                                                                               tgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAgg                      >  2:703064/1‑100 (MQ=255)
                                                                                gaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGt                     <  2:1284261/100‑1 (MQ=255)
                                                                                 aaTAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGtt                    <  2:2453085/100‑1 (MQ=255)
                                                                                     aGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAcn                <  2:1436102/100‑2 (MQ=255)
                                                                                      gCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑gg             >  2:1714150/1‑100 (MQ=255)
                                                                                       cTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑gga            <  1:2180273/100‑1 (MQ=255)
                                                                                         gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg          <  2:1469662/100‑1 (MQ=255)
                                                                                         gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg          >  2:2562039/1‑100 (MQ=255)
                                                                                         gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg          >  1:1797427/1‑100 (MQ=255)
                                                                                         gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg          <  2:1377511/100‑1 (MQ=255)
                                                                                         gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg          >  1:1844169/1‑100 (MQ=255)
                                                                                           aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑Ggaggag        <  2:1844179/100‑1 (MQ=255)
                                                                                           aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑Ggaggag        <  2:533634/100‑1 (MQ=255)
                                                                                              ggATGGCCTGATGTGACGCTGTCTTATCAGGCCatccgtttcagcttattcatcaattcgcggatgttgctgcaccaggcgggtacgtttcgcctgcaaa       <  2:2517818‑M2/100‑68 (MQ=255)
                                                                                               gATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTg    >  1:773453/1‑100 (MQ=255)
                                                                                                 tGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGagag      <  1:957037/96‑1 (MQ=255)
                                                                                                 tGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCC‑‑GTTAACCTGGAGGAGAGtatg  <  2:1943008/100‑4 (MQ=37)
                                                                                                 tGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCC‑‑GTTAACCTGGAGGAGAGtatg  <  2:2114392/100‑4 (MQ=37)
                                                                                                 |                                                                                                     
AAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCA  >  NC_000913/4331919‑4332115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.