New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4554509 =NA (NA)8 (0.090) 6/164 NT NA noncoding (5/34 nt) REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4554539 = NA (NA)intergenic (+178/‑37) uxuB/uxuR D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor

Only 100 of 125 total aligned reads displayed.

TTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTAC  >  NC_000913/4554410‑4554608
                                                                                                   |                                                                                                   
agatcgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttg                                                                                                     <  2:1558924‑M1/1‑1 (MQ=255)
 gatcgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGc                                                                                                    <  2:2022691‑M1/2‑1 (MQ=255)
  gACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAgg                                                                                                     >  1:1572664/1‑98 (MQ=255)
   tcgcggatcatcgccccgacttccgggtaaggtctttgcgcagaggtggcagatttcattgtgttgtgtccgttaggtgcggttaatcaaatttttGcc                                                                                                   >  1:1166603‑M1/97‑99 (MQ=255)
    cgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCgg                                                                                                 >  1:2356667‑M1/96‑100 (MQ=255)
    cgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCgg                                                                                                 >  1:2400766‑M1/96‑100 (MQ=255)
    cgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCg                                                                                                  >  2:1096637‑M1/96‑99 (MQ=255)
    cgcagatcatccccccgacttcctggcaacgtctttgcgcagaggtggcagatttcatggttttgtgtccgttaggtgcggttaatcaaatttttGCCgg                                                                                                 >  1:1163479‑M1/96‑100 (MQ=255)
    ccAGTTTTCGTTTTTTTGCCCACCTGTACTTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCgc                                                                                                 <  1:2373092/100‑2 (MQ=255)
    ccAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCgg                                                                                                 <  1:2531061/100‑1 (MQ=255)
          ttCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAgg                                                                                           <  2:1175563/100‑1 (MQ=255)
            cGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCg                                                                                         >  1:672312/1‑100 (MQ=255)
             gTTTTTTTTCTTACTTGTACGTGCCAACTTCCAGTGCGAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCTGGATAAGGCGt                                                                                        >  1:1377108/1‑100 (MQ=255)
             gTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCg                                                                                         >  1:1132451/1‑99 (MQ=255)
             gTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGt                                                                                        >  2:524798/1‑100 (MQ=255)
             gTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGt                                                                                        >  1:1787989/1‑100 (MQ=255)
                 ttttGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAc                                                                                    <  2:1320069/100‑1 (MQ=255)
                    tGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTTTAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                 >  1:2387610/1‑100 (MQ=255)
                     gCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgccg                                                                                >  1:632847/1‑100 (MQ=255)
                      cccACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgccgc                                                                               >  2:2482323/1‑100 (MQ=255)
                       ccACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgccgcn                                                                              <  1:945859/100‑2 (MQ=255)
                        cACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                                             >  2:366023/1‑100 (MQ=255)
                        cACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                                             >  2:2031717/1‑100 (MQ=255)
                         aCCTGGACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATc                                                                            <  1:2113551/100‑1 (MQ=255)
                          ccTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                                                                           <  2:922391/100‑1 (MQ=255)
                          ccTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                                                                           >  2:1743099/1‑100 (MQ=255)
                           ctgtgggTGCCAACTTCCAGTGCTACTGGTATAGTGTGAGATTAGCGGGGGCCGTAAAACTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATcc                                                                           <  1:2252792/93‑1 (MQ=21)
                            tttACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                         <  1:2422394/98‑1 (MQ=255)
                             gtaaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:2285281‑M1/71‑100 (MQ=255)
                             gTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        <  2:1309774/100‑1 (MQ=255)
                              taaggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCGGATAAGTCGTTCACGCCGCATCCGGCa                                                                       >  1:1583086‑M1/70‑100 (MQ=255)
                               agggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                      >  2:628529‑M1/69‑100 (MQ=255)
                               acatGCCAACTTCCAGTGCTAATTGTATAGTTTGAGATTAACGGGGGCCGTATGATTGCCCGTTGTCGGCCGGATTCGGCGTGAACCCCTTATCCGGc                                                                        <  1:2023402/95‑1 (MQ=25)
                                aggtctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCGGATAAGGCGTTCACGCCGCATCCGGCaaa                                                                     >  1:2421399‑M1/68‑100 (MQ=255)
                                  tGCCAACTTCCAGTGTTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaaaaa                                                                   <  2:2554808/100‑1 (MQ=255)
                                   tctttgcgcagaggtggcagatttcatggtgttgtgtccgttaggtgcggttaatcaaatttttGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAAt                                                                  >  2:2312783‑M1/65‑100 (MQ=255)
                                   gCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAAt                                                                  >  2:2003028/1‑100 (MQ=255)
                                   gCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCaaaaa                                                                   >  1:1828315/1‑99 (MQ=255)
                                   gCCAACTTCCAGTGCTAATGGTATAGTTCGAGATCGTCGGCGTCCGTGAATTGGCCCGTTGTACGGCCGATAAGGCTTTACCGCCGCCTCCGGaaaca                                                                    >  1:2410269/1‑96 (MQ=255)
                                    ccAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAAtt                                                                 <  1:258330/100‑1 (MQ=255)
                                    ccAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAAtt                                                                 >  1:2210354/1‑100 (MQ=255)
                                    ccAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCAACAAGCAAAAAtt                                                                 <  1:258169/100‑1 (MQ=255)
                                      aaCTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTg                                                               <  1:1464289/100‑1 (MQ=255)
                                      aaCTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTg                                                               <  2:1677005/100‑1 (MQ=255)
                                      aaCTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTg                                                               <  2:632850/100‑1 (MQ=255)
                                        cTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGAt                                                             <  2:2247157/100‑1 (MQ=255)
                                        cTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGAt                                                             >  2:978361/1‑100 (MQ=255)
                                           ccAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCTCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTaa                                                          >  1:2494447/1‑100 (MQ=255)
                                            cAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAAc                                                         >  1:462744/1‑100 (MQ=255)
                                             aGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTaa                                                          <  1:686787/98‑1 (MQ=255)
                                             aGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAAcc                                                        <  1:353107/100‑1 (MQ=255)
                                             aGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAAcc                                                        <  2:1106944/100‑1 (MQ=255)
                                               tGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGc                                                      >  2:966109/1‑100 (MQ=255)
                                                gCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCa                                                     >  2:1496147/1‑100 (MQ=255)
                                                gCTAATGGGATAGTTAGAGATTAACGGGGGCCGTAAAATGGCCCGTTGCAGGACGGATACGGCGTTCTCGCTGGATCAGGCAAAATTTTGACTACCCGCa                                                     <  1:803548/100‑1 (MQ=255)
                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCAcc                                                   >  2:1098467/1‑100 (MQ=255)
                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCAcc                                                   <  1:1743090/100‑1 (MQ=255)
                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTGGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCa                                                     <  2:2017606/98‑1 (MQ=255)
                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATGGCCCGTTGTAGGCCGGATAAGGCGCTCACGCCGAAACCAACAAAAATTTGATTAACCGCAcc                                                   <  1:772964/100‑1 (MQ=38)
                                                    aTGGTATAGTTGGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCAAAAATTTGATTAACCGCACCt                                                  <  2:2490170/99‑1 (MQ=255)
                                                        tataGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCAGCAAAAATTTGATTAACCGCACCTAACgg                                             >  1:1551030/1‑100 (MQ=255)
                                                            gTTTGAGATTAACGGGGGCCGTAAAATTTCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGacac                                         <  1:461982/100‑1 (MQ=255)
                                                            gTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGacac                                         <  2:72702/100‑1 (MQ=255)
                                                            gTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGacac                                         <  1:1574674/100‑1 (MQ=255)
                                                              ttGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAGATTTGATTAACCGCACCTAACGGACacaa                                       >  1:1558915/1‑100 (MQ=255)
                                                               tGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACacaac                                      >  1:2098575/1‑100 (MQ=255)
                                                                gagaTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGACGCAACAGGCAAAAATTTGATTAACCGCACCTAACGGACacaaca                                     <  1:135875/100‑1 (MQ=255)
                                                                 agaTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAacac                                    >  2:2132476/1‑100 (MQ=255)
                                                                  gaTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAacac                                    >  1:598269/1‑99 (MQ=255)
                                                                  gaTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACAcc                                   >  2:2200193/1‑100 (MQ=255)
                                                                   aTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCa                                  >  2:982946/1‑100 (MQ=255)
                                                                     tAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATg                                >  1:174692/1‑100 (MQ=255)
                                                                        cGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGaaa                             <  1:1422411/100‑1 (MQ=255)
                                                                        cGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGaaa                             >  1:1967441/1‑100 (MQ=255)
                                                                           gggCCGTAAAATTGCCCGTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATc                           <  1:904798/99‑1 (MQ=255)
                                                                            ggCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCtn                         <  1:2290188/100‑2 (MQ=255)
                                                                            ggCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTg                         <  1:800393/100‑1 (MQ=255)
                                                                              ccGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGcc                       <  1:15463/100‑1 (MQ=255)
                                                                              ccGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGACATCTGc                        >  1:2328644/1‑99 (MQ=255)
                                                                               cGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCa                      >  2:551232/1‑100 (MQ=255)
                                                                               cGTAAAATTGCCCGTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCa                      >  1:1012755/1‑100 (MQ=255)
                                                                                 tAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCAcc                    >  1:714864/1‑100 (MQ=255)
                                                                                 tAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCAcc                    <  2:1787998/100‑1 (MQ=255)
                                                                                   aaaTTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACctc                  >  1:1439368/1‑100 (MQ=255)
                                                                                    aaTTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACctct                 >  1:365144/1‑100 (MQ=255)
                                                                                    aaTTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACctct                 >  2:257914/1‑100 (MQ=255)
                                                                                     aTTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTg                >  1:1462728/1‑100 (MQ=255)
                                                                                       tGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTgcg              >  1:2034030/1‑100 (MQ=255)
                                                                                       tGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTgcg              <  1:2249779/100‑1 (MQ=255)
                                                                                        gCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTgcgc             >  1:920522/1‑100 (MQ=255)
                                                                                          ccGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCaa           <  1:1673026/100‑1 (MQ=255)
                                                                                           cGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCaaa          <  2:2434214/100‑1 (MQ=255)
                                                                                           cGTTGTAGGCCAGATAAGGCGTTCACGCCGCATACGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCaaa          >  1:1559467/1‑100 (MQ=255)
                                                                                            gTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAg         <  2:672315/100‑1 (MQ=255)
                                                                                                tttGCCGGATGCGGCGTGAACGCCTTATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCt     <  1:1340430‑M1/97‑1 (MQ=255)
                                                                                                tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCt     >  1:1516523/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTa   >  1:2433133/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTa   >  2:1791002/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTa   >  1:919035/1‑100 (MQ=255)
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTAc  <  1:2313227‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTAC  >  NC_000913/4554410‑4554608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.