New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 277706NA (NA)11 (0.130) 8/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 150 total aligned reads displayed.

CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805
                                                                                                   |                                                                                                   
ccacGCCTGCGGATATCGCCGCGTTAAAAGCGCGCAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCAtt                                                                                                     >  1:939964/1‑100 (MQ=255)
 cACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTg                                                                                                    <  2:1243205‑M1/100‑2 (MQ=255)
 cACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTg                                                                                                    <  1:1730865‑M1/100‑2 (MQ=255)
    gCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccg                                                                                                 <  1:1432012‑M1/100‑5 (MQ=255)
    gCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTATAGGCCTGATAAGCGCAGCGCATCAGGCATTgccg                                                                                                 <  2:810151‑M1/100‑5 (MQ=255)
     ccTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccgg                                                                                                >  2:940456‑M1/1‑95 (MQ=255)
       tGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat                                                                                              >  2:338522‑M1/1‑93 (MQ=255)
       tGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat                                                                                              >  1:537061‑M1/1‑93 (MQ=255)
           gATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcg                                                                                          <  2:1650758/100‑1 (MQ=255)
             tatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcggc                                                                                        <  2:914359/100‑1 (MQ=255)
             tatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcggc                                                                                        >  2:2029296/1‑100 (MQ=255)
             tatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcggc                                                                                        <  1:2574553/100‑1 (MQ=255)
              atCGCCGCTTTAAAAGCGCGAAGCTGAGGGGTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGTGCATCAGGCATTGCCGGATGGCGGca                                                                                       <  1:1403334/100‑1 (MQ=255)
               tCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcac                                                                                      <  2:735362/100‑1 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     >  2:1278015/1‑100 (MQ=255)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACaa                                                                                    >  2:1373099/1‑100 (MQ=255)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACaa                                                                                    >  2:2420159/1‑100 (MQ=255)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACaa                                                                                    >  2:2198222/1‑100 (MQ=255)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACaa                                                                                    <  1:2029284/100‑1 (MQ=255)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTAGCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcac                                                                                      <  2:1427849/98‑1 (MQ=255)
                  ccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAg                                                                                   <  2:827818/100‑1 (MQ=255)
                     cgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAgcgc                                                                                <  1:1803458/100‑1 (MQ=255)
                      gTTAAAAGCGCGGAGCTGAGGGTTTCTCGGGTCTACATCGTGCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAgc                                                                                  <  1:1454199/97‑1 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  1:1140052/100‑1 (MQ=255)
                         aaaaGCGCGAAGCTGAGGGTTTATCGGGTCTACTTCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTA                                                                            <  1:1708934‑M2/100‑1 (MQ=255)
                          aaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTAT                                                                           <  2:2449730‑M2/100‑1 (MQ=255)
                           aaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatc                                                                          <  1:2031826‑M1/100‑28 (MQ=255)
                            aGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatcc                                                                         <  1:2376144‑M1/100‑29 (MQ=255)
                            aGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCC                                                                         <  2:1438578‑M2/100‑1 (MQ=255)
                             gcgcGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCG                                                                        >  2:2324586‑M2/1‑100 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       >  2:2414085‑M2/1‑100 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggc                                                                      <  2:78994‑M1/100‑32 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      >  1:940453‑M2/1‑100 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      >  2:373147‑M2/1‑100 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:1282015/100‑1 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:370042/100‑1 (MQ=255)
                                 gAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCt                                                                    <  1:47397/100‑1 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatg                                                                  <  2:2494041‑M1/100‑36 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgcccccatccggcaagg                                                                  <  2:1749188‑M1/100‑36 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTAc                                                                  <  2:198867/100‑1 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGCCATTgccggctaaggcgcttgtgccgccatccggcactg                                                                  <  1:762791‑M1/100‑36 (MQ=255)
                                     cTGAGGGTTGATCGGGTCTACATCGTTCATTGTAGGTCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcc                                                                <  1:1930837‑M1/100‑38 (MQ=255)
                                      tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                                               >  2:1351658/1‑100 (MQ=255)
                                       gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                              <  1:2198207/100‑1 (MQ=255)
                                       gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                              >  1:2296237/1‑100 (MQ=255)
                                         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCCGCGCATCGGGCATTGCCGGATTGCGGACCAAGCGGCTTATCAGGCCTACAGAAcc                                                            >  1:1017610/1‑100 (MQ=37)
                                         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCTACAAAAc                                                             <  1:1056386/98‑1 (MQ=255)
                                          ggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACca                                                           >  1:2369486/1‑100 (MQ=255)
                                           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                          >  2:1932207/1‑100 (MQ=255)
                                             ttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaa                                                        <  1:568654/100‑1 (MQ=255)
                                              tctCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaaa                                                       >  2:1757693/3‑100 (MQ=255)
                                                  gggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcctgatgcgctgcgc                                                   <  2:1762672‑M1/100‑51 (MQ=255)
                                                    gTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTa                                                 <  2:154386/100‑1 (MQ=255)
                                                    gTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTa                                                 <  2:1823265/100‑1 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACACAACCACAAAACGTTATGcc                                             >  1:2246947/1‑100 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGcc                                             >  2:562529/1‑100 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGcc                                             <  2:1000005/100‑1 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGcc                                             >  1:432210/1‑100 (MQ=255)
                                                         cATCGTCCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  1:2272733/100‑1 (MQ=255)
                                                            cGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCAt                                         >  2:490630/1‑100 (MQ=255)
                                                               tCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCg                                      >  1:658214/1‑100 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    <  2:1556903/100‑1 (MQ=255)
                                                                   tGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg                                  <  2:2293172/100‑1 (MQ=255)
                                                                      aGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                               <  2:1883558/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAACACGTTATGCCGCGTCCGCCAGaaca                              >  1:1650476/1‑100 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              <  2:658217/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  2:303771/1‑100 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  2:1033768/1‑100 (MQ=255)
                                                                        gCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGTGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaa                             >  2:167408/1‑100 (MQ=255)
                                                                          cTGATACGCGCGGCGCATCAGGCATCGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACATAACCACAAAACGTTATGCCGCATCCGACAGaacaaac                           <  1:1385506/100‑1 (MQ=38)
                                                                          cTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           <  1:1237497/100‑1 (MQ=255)
                                                                           tGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaaca                          <  1:2059967/100‑1 (MQ=255)
                                                                            gATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACAt                         >  1:293553/1‑100 (MQ=255)
                                                                             aTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaacaag                        <  2:2401001/100‑3 (MQ=255)
                                                                             aTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATg                        >  2:289713/1‑100 (MQ=255)
                                                                             aTAAGCGCAGCGCATCAGGCATTGCCGGATCGCGGCACAAGCTCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATg                        <  1:2255671/100‑1 (MQ=255)
                                                                               aaGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGcc                      >  1:2103598/1‑100 (MQ=255)
                                                                                agcgcagcgcATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                     >  2:2003516/1‑100 (MQ=255)
                                                                                 gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    >  1:2002371/1‑100 (MQ=255)
                                                                                 gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    <  1:2119194/100‑1 (MQ=255)
                                                                                 gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    <  1:1351650/100‑1 (MQ=255)
                                                                                   gcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTAc                  >  1:2580668/1‑100 (MQ=255)
                                                                                     agcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACgg                <  2:437314/100‑1 (MQ=255)
                                                                                     agcgcaTCAGGCATTGCCGGAGGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACgg                <  2:1793274/100‑1 (MQ=255)
                                                                                      gcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACgga               >  2:2565929/1‑100 (MQ=255)
                                                                                       cgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggat              >  1:2361905/1‑100 (MQ=255)
                                                                                       cgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggat              >  2:419482/1‑100 (MQ=255)
                                                                                       cgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACgga               >  2:1402600/1‑99 (MQ=255)
                                                                                        gcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatg             <  1:2441826/100‑1 (MQ=255)
                                                                                         caTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaacc            <  1:2379945‑M2/100‑59 (MQ=255)
                                                                                         caTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg            >  2:1724027/1‑100 (MQ=255)
                                                                                            cAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAtt         <  2:1404417/100‑1 (MQ=255)
                                                                                              ggCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcagacctacaatgaacgatgtagacccgatcaaccctcag       <  1:1930837‑M2/100‑64 (MQ=255)
                                                                                                cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     <  1:1621583/100‑1 (MQ=255)
                                                                                                cAGTGCCGGATGGCGGCACAAGCGCCTTAGCCGGCaatggctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagct     <  1:762791‑M2/100‑66 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGTCCTACATAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  1:1819374/100‑1 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  2:2025322/100‑1 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  1:289710/100‑1 (MQ=255)
                                                                                                  ttGCCGGATGGCGGCACAAGCGCCTTATCCGGGCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGa   >  2:2458474/1‑100 (MQ=255)
                                                                                                  ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttc   <  2:639516‑M2/100‑68 (MQ=255)
                                                                                                   |                                                                                                   
CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.