New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 279841	NA (NA)	15 (0.170)	8/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 279852	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAA  >  NC_000913/279834‑279940        |                                                                                                    aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag         <  2:871976/100‑1 (MQ=11)  gTAGCTGAACAGGGGGGACAGCTGATAGAAACAGAAGGCACTGGAGCACCTCAAAATCACCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCgaga        <  1:87440/100‑1 (MQ=11)  gTAGCTGAACAGGAGGGACAGCTGATAAAAACAGAAGCTACTGGAGCACCTCAAAAACACCATAATCCACTAACTAAGTAAGTTGACAGCATCACCgaga        >  1:244368/1‑100 (MQ=11)     gCTGAACAGGAGGGACAGCTGCTAGAAACAGAATCCACTGGCGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGTCAGCATCACCGAGAaca     >  1:264540/1‑100 (MQ=11)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca     >  1:2065604/1‑100 (MQ=35)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca     >  2:1564014/1‑100 (MQ=35)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca     >  2:355113/1‑100 (MQ=35)        gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGAACACaa  >  2:559832/1‑100 (MQ=38)        |                                                                                                    AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAA  >  NC_000913/279834‑279940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.