| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913 | 380,020 | (G)10→7 | 100% | intergenic (‑139/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 380016 = | 3 (0.030) | 72 (0.850) | 50/164 | NT | 96.2% | intergenic (‑135/+53) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| ? | NC_000913 | = 380012 | 3 (0.040) | intergenic (‑131/+57) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein | |||||
TAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGAC > NC_000913/379914‑380106 | taggggggtatgcattgacatatagaatacccccctatagtatatAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAg > 1:657569‑M2/46‑100 (MQ=255) aggggggtatgcattgacatatagaagacccccctatagtatatAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg > 2:1580410‑M2/45‑100 (MQ=255) ggggggtatgcattgacatatagaatacccccctatagtatatAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg > 1:611193‑M2/44‑100 (MQ=255) ggggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg < 1:362043‑M2/100‑4 (MQ=255) ggggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg < 2:677807‑M2/100‑4 (MQ=255) gggggtatgcattgacatatagaatacccccctatagtatatAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg > 2:2445362‑M2/43‑100 (MQ=255) gggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg > 2:822178‑M2/1‑96 (MQ=255) ggggtatgcattgacatatagaatacccccctatagtatatAACACTGGAGAATAAAATTTATCCGGTGAATGTGGACGGAAAACAAAGAGGAAAgg > 1:1736944‑M2/42‑97 (MQ=255) gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg > 2:1693407‑M2/1‑94 (MQ=255) ggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg > 1:1689619‑M2/1‑93 (MQ=255) cgatCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc < 1:255646/97‑2 (MQ=255) tctCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggct < 2:780525/98‑3 (MQ=255) cTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaga > 1:780522/1‑95 (MQ=255) cTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgaggggggctaa < 2:2253892‑M2/99‑13 (MQ=255) atatGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcg < 2:2490814‑M2/100‑16 (MQ=255) atatGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggcagatcg > 2:255649/1‑93 (MQ=255) atGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggc < 2:1620848‑M2/100‑18 (MQ=255) gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcag > 1:1183311‑M2/1‑81 (MQ=255) gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcag > 2:1135817‑M2/1‑81 (MQ=255) tCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagg > 2:2006356‑M2/1‑80 (MQ=255) tCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagg > 2:409169‑M2/1‑80 (MQ=255) tCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagg > 2:1275009‑M2/1‑80 (MQ=255) tGCATACCCCCCTATAGTATATAACACTGGAGAACAAAATTTATCCGCTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaag > 2:1409933‑M2/1‑76 (MQ=255) cATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggc < 1:1396001‑M2/100‑27 (MQ=255) cATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggc < 1:2566282‑M2/100‑27 (MQ=255) tACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccg < 2:307570‑M2/100‑29 (MQ=255) tACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccg < 1:1927667‑M2/100‑29 (MQ=255) aCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccg > 2:354479‑M2/1‑71 (MQ=255) aCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgcc > 1:1610454‑M2/1‑71 (MQ=255) aCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGGCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgc > 1:1253597‑M2/1‑71 (MQ=255) cccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccgg > 1:1407953‑M2/1‑67 (MQ=255) ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccgg > 2:2060204‑M2/1‑66 (MQ=255) ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccgga > 2:1970840‑M2/1‑66 (MQ=255) tataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggat < 1:133549‑M2/100‑37 (MQ=255) gtatatAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGc < 2:104908‑M2/94‑1 (MQ=255) tatataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgg > 2:1199313‑M2/1‑59 (MQ=255) tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggc > 2:541847‑M2/1‑57 (MQ=255) tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcg < 1:479021‑M2/100‑44 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcg < 2:1901320‑M2/100‑45 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcgg < 2:1880956‑M2/100‑45 (MQ=255) taACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcgg > 1:2084914‑M2/1‑55 (MQ=255) taACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcgg < 2:740121‑M2/100‑46 (MQ=255) aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggc > 2:409372‑M2/1‑54 (MQ=255) aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggc > 1:444566‑M2/1‑54 (MQ=255) aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggc > 1:607579‑M2/1‑54 (MQ=255) aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggc > 2:606497‑M2/1‑54 (MQ=255) acacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggca < 2:2042254‑M2/100‑48 (MQ=255) acacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggca < 2:2239093‑M2/100‑48 (MQ=255) acacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGggcggc > 2:1816161/1‑100 (MQ=255) cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcag < 1:1736975‑M2/100‑49 (MQ=255) cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcag > 2:1736984‑M2/1‑52 (MQ=255) ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaagg < 2:1475285‑M2/100‑53 (MQ=255) ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaagg < 2:184773‑M2/100‑53 (MQ=255) ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaagg < 2:2031983‑M2/100‑53 (MQ=255) gaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggtgctaatcagcagggaaggctgccccggatagcgggcggcagaaggaat < 1:799066‑M2/100‑56 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatca < 2:1082493‑M2/100‑58 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatca > 2:598301‑M2/1‑43 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcag > 1:1137318‑M2/1‑42 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcag > 2:922757‑M2/1‑42 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcaga > 1:2195304‑M2/1‑42 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaa > 1:2553528‑M2/1‑40 (MQ=255) aaaTTTATCCGGTGAATGTGGTAGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggaaagcgggcggcagaaggaagcagaa < 1:687452‑M2/99‑60 (MQ=255) tttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaattt > 1:2008205‑M2/1‑37 (MQ=255) tATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttcca > 1:2181573‑M2/1‑35 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttcca > 1:1620839‑M2/1‑34 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccag > 2:731203‑M2/1‑33 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccagg > 2:1964053‑M2/1‑33 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccagg < 1:2380271‑M2/100‑69 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccagg < 1:209645‑M2/100‑69 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccagg < 2:1026122‑M2/100‑69 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccagg < 2:127664‑M2/100‑69 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccagg > 2:2414253‑M2/1‑32 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggt < 2:2360029‑M2/100‑70 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtc < 2:2235245‑M2/100‑71 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAgg > 2:1817484/1‑99 (MQ=255) gTGAATGTTGTCGGAAAACAAAGAGGAAA‑GAGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTc < 1:340833/100‑1 (MQ=255) gTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtca < 2:1149146‑M2/100‑72 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcaga > 2:1007058‑M2/1‑27 (MQ=255) tgGTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggc < 1:820213‑M2/100‑79 (MQ=255) gTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctg < 1:1891248‑M2/100‑81 (MQ=255) gTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctg > 2:1844214‑M2/1‑20 (MQ=255) gTCGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctg > 2:1901508‑M2/1‑20 (MQ=255) cGGAAAACAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgca < 2:231937‑M2/100‑83 (MQ=255) aaaaCAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagt > 2:884710‑M2/1‑15 (MQ=255) aaaCAACGAGGAAAggggggggctaatcggcagggaaggccgccccggatagccggcggcagaaggaatcagaatttccaggtcagacgggctgcaagtt > 2:1943828‑M2/1‑14 (MQ=255) aCAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgc > 2:2116571‑M2/1‑12 (MQ=255) cAAAGAGGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgca > 2:2002046‑M2/1‑11 (MQ=255) gagGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgcagacc > 2:362045‑M2/1‑7 (MQ=255) agGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacggtctgcaacttgcagcccg > 2:298795‑M2/1‑6 (MQ=255) agGAAAggggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgcagaccg > 2:611196‑M2/1‑6 (MQ=255) agGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgcagaccgt > 1:1880946‑M2/1‑6 (MQ=255) | TAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGAC > NC_000913/379914‑380106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |