New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 48428362 (0.680)12 (0.140) 5/162 NT 16.1% coding (121/3150 nt) acrB multidrug efflux system protein
?NC_000913 = 484309 69 (0.830)coding (95/3150 nt) acrB multidrug efflux system protein

AACCTGTGTCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCT  >  NC_000913/484212‑484407
                                                                                                 |                                                                                                  
aaCCTGTGTCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCAcc                                                                                                  >  1:60638‑M2/1‑98 (MQ=255)
aaCCTGTGTCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCAcc                                                                                                  >  1:2513317‑M2/1‑98 (MQ=255)
aaCCTGTGTCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCAcc                                                                                                  >  2:904964‑M2/1‑98 (MQ=255)
   cTGTGTCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCATAGGATATTGCGCCAccggc                                                                                               >  1:2466717‑M2/1‑95 (MQ=255)
     gtgtCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcag                                                                                             <  2:2305116‑M2/100‑8 (MQ=255)
       gtCACCGTGTCCTGCACTGTTTTCGCACCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGtt                                                                                           >  1:1208995/1‑100 (MQ=255)
          aCCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCAccg                                                                                                 <  1:2213513‑M2/91‑4 (MQ=255)
            cGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAgg                                                                                      >  1:112681/1‑100 (MQ=255)
            cGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAgg                                                                                      <  2:1238962/100‑1 (MQ=255)
              tgtCCTTCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAgg                                                                                      <  1:722753/98‑1 (MQ=255)
                tCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCg                                                                                  <  2:2083658/100‑1 (MQ=255)
                tCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCg                                                                                  <  2:1033214/100‑1 (MQ=255)
                  cTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATGGTTACTGCCGGCGGTGGAATCGTAGGATATTGTGCCACCGGCAGTTTGAGGATCGc                                                                                 >  1:2099319/1‑99 (MQ=255)
                    gCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAg                                                                              >  2:1540275/1‑100 (MQ=255)
                    gCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAg                                                                              >  1:1121480/1‑100 (MQ=255)
                       cTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGccc                                                                           >  2:205460/1‑100 (MQ=255)
                         gTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGccccc                                                                         >  2:327224/1‑100 (MQ=255)
                          ttttCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGcccccc                                                                        <  1:205458/100‑1 (MQ=255)
                            ttCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTg                                                                      <  1:2163509/100‑1 (MQ=255)
                               gCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCa                                                                   >  1:1709876/1‑100 (MQ=255)
                               gCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCa                                                                   >  1:1074028/1‑100 (MQ=255)
                                cATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCaa                                                                  >  2:2099359/1‑100 (MQ=255)
                                 aTCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAAc                                                                 <  1:1218616/100‑1 (MQ=255)
                                 aTCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAAc                                                                 >  1:1478935/1‑100 (MQ=255)
                                  tCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACa                                                                <  2:1716626/100‑1 (MQ=255)
                                   cAGCGCCGGGGTATGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATAGTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACat                                                               <  1:769380/100‑1 (MQ=255)
                                   cAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACat                                                               >  2:1793251/1‑100 (MQ=255)
                                   cAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACat                                                               <  2:1237924/100‑1 (MQ=255)
                                    aGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACatg                                                              <  2:1211473/100‑1 (MQ=255)
                                     gcgcCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACatga                                                             >  1:1044787/1‑100 (MQ=255)
                                     gcgcCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACatga                                                             >  2:1599823/1‑100 (MQ=255)
                                     gcgcCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACatga                                                             >  1:668721/1‑100 (MQ=255)
                                        ccGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACAtgatga                                                          <  1:1684340/100‑1 (MQ=255)
                                         cGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATgatgat                                                         <  2:1063594/100‑1 (MQ=255)
                                         cGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATgatgat                                                         <  2:169718/100‑1 (MQ=255)
                                            ggTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCACCCTGCCAACATGATGATAAt                                                      >  2:457814/1‑100 (MQ=255)
                                              tAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATgg                                                    <  1:2479796/100‑1 (MQ=255)
                                               aggaggCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGc                                                   >  2:211150/1‑100 (MQ=255)
                                               aggaggCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGc                                                   <  1:133396/100‑1 (MQ=255)
                                                ggaggCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCg                                                  >  2:2256824/1‑100 (MQ=255)
                                                ggaggCGGAGATCGTTACGGCCGGCGGTGCAATCGGATGATACTGCGCCAACGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGc                                                   <  1:645225/99‑1 (MQ=255)
                                                  aggCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGAt                                                >  2:93248/1‑100 (MQ=255)
                                                         gaTCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCAc                                         <  2:1761366/100‑1 (MQ=255)
                                                           tCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGc                                       >  2:1518161/1‑100 (MQ=255)
                                                            cGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAAGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCa                                      <  1:2379586/100‑1 (MQ=255)
                                                             gTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCaa                                     <  2:1588539/100‑1 (MQ=255)
                                                             gTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCaa                                     >  2:1372831/1‑100 (MQ=255)
                                                                gctGCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgaca                                  <  1:1806821‑M2/99‑67 (MQ=255)
                                                                 cTGCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacac                                 <  1:1513009‑M2/100‑68 (MQ=255)
                                                                 cTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAAt                                 <  1:1195279/100‑1 (MQ=255)
                                                                 cTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAAt                                 >  2:2418477/1‑100 (MQ=255)
                                                                  tGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATc                                <  2:592234/100‑1 (MQ=255)
                                                                  tGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATc                                >  1:2272559/1‑100 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCGccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacag                               <  1:1052292‑M2/100‑70 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCGccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacag                               <  1:1052302‑M2/100‑70 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgtaggacacggtgacacag                               <  2:747201‑M2/100‑70 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacag                               <  2:711047‑M2/100‑70 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacag                               <  2:1051676‑M2/100‑70 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacag                               <  1:1305287‑M2/100‑70 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCg                               <  2:1602067/100‑1 (MQ=255)
                                                                   gCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCg                               <  1:211148/100‑1 (MQ=255)
                                                                    ccGGCGGTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacagg                              <  2:2300897‑M2/100‑71 (MQ=255)
                                                                     cggcggTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacaggt                             <  2:1153229‑M2/100‑72 (MQ=255)
                                                                     cggcggTGCAATCGTAGGATATTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacaggt                             <  1:2138138‑M2/100‑72 (MQ=255)
                                                                     cggcggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAATAATCggg                             <  2:1362360/100‑1 (MQ=255)
                                                                     cggcggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg                             >  2:2399356/1‑100 (MQ=255)
                                                                     cggcggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg                             <  2:296118/100‑1 (MQ=255)
                                                                     cggcggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg                             <  2:2032/100‑1 (MQ=255)
                                                                      ggcggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcg                           >  2:1199330/1‑100 (MQ=255)
                                                                          gTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatc                        <  2:1464364/100‑1 (MQ=255)
                                                                          gTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGc                            <  1:1498440/96‑1 (MQ=255)
                                                                           tGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCTCCCCTGCCAACATGATGATAATGGCAATCACCCACGCAACAATCGGGcggtc                        >  2:2087518/1‑99 (MQ=255)
                                                                           tGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatcg                       <  2:1563607/100‑1 (MQ=255)
                                                                            gCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatcga                      >  1:1330696/1‑100 (MQ=255)
                                                                             cAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatcgat                     >  2:2204001/1‑100 (MQ=255)
                                                                             cAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatcgat                     <  1:1849418/100‑1 (MQ=255)
                                                                              aaTCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATa                    <  2:891202/100‑1 (MQ=255)
                                                                                 cGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAg                 >  2:2191861/1‑100 (MQ=255)
                                                                                  gTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGa                >  2:960680/1‑100 (MQ=255)
                                                                                       atatTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTa           <  1:481409/100‑1 (MQ=255)
                                                                                       atatTGCGCCACCGGCAGTTTGAGCATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGAAAAACAAAGCAAAAATCGGGCGATCGATAAAGAAATTa           <  1:1491662/100‑1 (MQ=255)
                                                                                        tatTGCGCCAccggcagtaacgatctccgcctcctaccccggcgctgatgcgaaaacagtgcaggacacggtgacacaggttatcgaacagaatatgaac          >  2:2138152‑M2/1‑10 (MQ=255)
                                                                                         atTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAgg         <  2:1376140/100‑1 (MQ=255)
                                                                                          ttGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGc        <  1:781446/100‑1 (MQ=255)
                                                                                           tGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATATAGAAATTAGGCa       <  2:1698237/100‑1 (MQ=255)
                                                                                           tGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCa       >  1:745161/1‑100 (MQ=255)
                                                                                           tGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCa       <  2:1327530/100‑1 (MQ=255)
                                                                                            gcgcCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCAt      >  2:1393627/1‑100 (MQ=255)
                                                                                               ccACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAACATCGGGCGATCGATAAAGAAATTAGGCATGTc   >  1:488436/1‑100 (MQ=255)
                                                                                               ccACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGt    <  1:952990/99‑1 (MQ=255)
                                                                                               ccACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTc   <  1:52361/100‑1 (MQ=255)
                                                                                                cACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCt  <  2:2087209/100‑1 (MQ=255)
                                                                                                 |                                                                                                  
AACCTGTGTCACCGTGTCCTGCACTGTTTTCGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCT  >  NC_000913/484212‑484407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.