New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432881NA (NA)4 (0.050) 4/166 NT NA coding (471/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432894 NA (NA)coding (484/576 nt) tfaR Rac prophage; putative tail fiber assembly protein

AACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAG  >  NC_000913/1432803‑1432959
                                                                                           |                                                                 
aaaaaaaaaCAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTg                                                           <  1:1254857/97‑1 (MQ=1)
                                                        cttcAGATCTGGAAATTGCATCGGAGGAAGAAATCTCGTTGCTGGAAGCACGGAAAAAGTATCGGGTAGTGCTGAACCGTTTTGATACGTCCACTGcaca   >  1:336368/4‑100 (MQ=1)
                                                            aggtcgggAAATTGCAACGGAGGAGGAGATCTCGTTGCTGGTTGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGAGACGTGAACTGCACAg  <  1:1154906/91‑1 (MQ=1)
                                                                                           |                                                                 
AACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAG  >  NC_000913/1432803‑1432959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.