New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3139625 =NA (NA)8 (0.090) 6/164 NT NA noncoding (5/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3139655 = NA (NA)noncoding (35/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 153 total aligned reads displayed.

TTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  >  NC_000913/3139557‑3139753
                                                                                                  |                                                                                                  
tttCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                                                   >  2:263255/1‑100 (MQ=255)
 gcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattgccggataaggcgttcacgccgcatccggcAAt                                                                                                  <  1:527126‑M2/3‑1 (MQ=255)
 gcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGCCGTTCACGCCGCATCCGGCAAt                                                                                                  >  1:1499795‑M1/68‑100 (MQ=255)
  tCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                                                                                 <  2:1257780/100‑1 (MQ=255)
  cgtgatgattagctttcgtaggcctgataagacgaggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                                                  >  2:1598666‑M1/67‑99 (MQ=255)
   gggatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattgccggataaggcgttcacgccgcatccggcAATCg                                                                                                <  2:1561306‑M2/5‑1 (MQ=255)
    tgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattgccggataaggcgttcacgccgcatccggcAAt                                                                                                  <  2:1777814‑M2/3‑1 (MQ=255)
    gagaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCTTTCACGCCGCATCCGGCAATCg                                                                                                <  1:1253292/99‑1 (MQ=255)
     gatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattgccggataaggcgttcacgccgcatccggcAATCGTg                                                                                              <  1:1036298‑M2/7‑1 (MQ=255)
     gatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                                                                              >  1:1623915‑M1/64‑100 (MQ=255)
     agaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                                                                              <  2:1140453/100‑1 (MQ=255)
       aCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCCAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCAGCCGGCAATCGTGca                                                                                            <  1:2424660/100‑1 (MQ=255)
         gAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGca                                                                                            >  1:2431744/1‑98 (MQ=255)
           aTACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAAt                                                                                        >  1:1887345/1‑100 (MQ=255)
           aTACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAAt                                                                                        >  1:2193089/1‑100 (MQ=255)
             gctgtcgtaggcgtgataagacgcggcggcggcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGGATCCGGCAATCGTGCACAATGc                                                                                      >  1:102444‑M1/56‑100 (MQ=255)
             aCGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGc                                                                                      >  1:426269/1‑100 (MQ=255)
             aCGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGc                                                                                      >  2:29394/1‑100 (MQ=255)
                gAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTg                                                                                   >  2:98623/1‑100 (MQ=255)
                  aGATAAGCGTCCAGGGTAAGGGAAGGTGTTCGTCACAACAAGCCATACACATCGGATAATGCGTTCATGCCGCATCCGGCAATCGTGCACAATGCCTGAt                                                                                 >  1:1506904/1‑100 (MQ=21)
                     tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                                              >  2:2567670/1‑100 (MQ=255)
                     tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                                              >  1:2412765/1‑100 (MQ=255)
                       aGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGAc                                                                            >  2:1884617/1‑100 (MQ=255)
                       aGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGAc                                                                            <  2:708204/100‑1 (MQ=255)
                         cGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGc                                                                          <  2:863783/100‑1 (MQ=255)
                            cAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGc                                                                       >  2:2171338/1‑100 (MQ=255)
                            cAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGc                                                                       >  1:849752/1‑100 (MQ=255)
                             aGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGcc                                                                      <  1:950656/100‑1 (MQ=255)
                             aGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGcc                                                                      <  2:472638/100‑1 (MQ=255)
                                  tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                                                 <  1:1783108/100‑1 (MQ=255)
                                  tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                                                 <  1:605943/100‑1 (MQ=255)
                                        ttGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCa                                                           <  1:127220/100‑1 (MQ=255)
                                         tGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAg                                                          >  1:724327/1‑100 (MQ=255)
                                          ggTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAgg                                                         <  1:852840/100‑1 (MQ=255)
                                           gtgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGc                                                        <  2:851813/100‑1 (MQ=255)
                                            tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAgg                                                         <  2:959470/98‑1 (MQ=255)
                                             gtTCGTCGCAGCAAGTCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCt                                                      >  2:2428342/1‑100 (MQ=255)
                                             gtTCGTCGCAGCAAGCCATCCAGGCCTGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcat                                                      <  1:2570030/100‑3 (MQ=21)
                                             gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCt                                                      >  2:2333598/1‑100 (MQ=255)
                                             gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcat                                                      <  2:60019/100‑3 (MQ=21)
                                              ttCGTCGCAGCCAGCCAACCAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCCATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGca                                                       <  1:2092488/98‑2 (MQ=18)
                                               tcgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTTCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattg                                                    <  2:134624/100‑5 (MQ=21)
                                               tcgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTAc                                                    <  2:580138/100‑1 (MQ=255)
                                               tcgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattg                                                    <  2:1072334/100‑5 (MQ=18)
                                                cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACg                                                   >  1:31025/1‑100 (MQ=255)
                                                cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattgt                                                   <  2:1666068/100‑6 (MQ=18)
                                                 gtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAGGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattgtg                                                  <  1:2263381/100‑7 (MQ=18)
                                                 gtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGa                                                  >  2:2501575/1‑100 (MQ=255)
                                                   cgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaaa                                                <  2:413880/100‑1 (MQ=255)
                                                    gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                                               <  2:2518905/100‑1 (MQ=255)
                                                    gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                                               <  2:1045965/100‑1 (MQ=255)
                                                    gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattgtgcac                                               <  2:1141126/100‑10 (MQ=18)
                                                     cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                                              <  1:2259471/100‑1 (MQ=255)
                                                     cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                                              >  2:476393/1‑100 (MQ=255)
                                                      agcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCt                                             >  1:1014967/1‑100 (MQ=255)
                                                        caAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTaa                                           <  1:1972972/100‑1 (MQ=255)
                                                          aGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatc                                         <  1:2480542/100‑1 (MQ=255)
                                                          aGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatc                                         <  2:1900948/100‑1 (MQ=255)
                                                          aGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAat                                          <  1:2366013/99‑1 (MQ=255)
                                                           gCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatca                                        >  1:2244186/1‑100 (MQ=255)
                                                           gCCATCCACGCCTGATAAGGCGTTCACGCCTCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTTCCGCGTCTTATCAGGCCTACGAAAGCTAatca                                        <  1:86983/100‑1 (MQ=18)
                                                             cacgattGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatcatc                                      <  1:1036298‑M1/93‑1 (MQ=255)
                                                             cATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTGTTATCAGGCCTACGAAAGCTAatcatc                                      >  2:686775/1‑100 (MQ=255)
                                                             cATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGACAGCTAatcatc                                      >  1:2514250/1‑100 (MQ=255)
                                                               cgattGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCtaatcatccc                                    <  2:1561306‑M1/95‑3 (MQ=255)
                                                                 cgatctGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc                                  >  2:2099937‑M1/7‑100 (MQ=255)
                                                                 cAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCAGCGTCTTATCCCGCCTACGACAGCTAATCATCAcgc                                  >  1:2298144/1‑100 (MQ=21)
                                                                 attgccggatgcggcgtgaacgccttatccggcAATCGTTCACAATGCCTGATGCGACGCCGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc                                  >  1:103672‑M2/34‑100 (MQ=255)
                                                                 attgccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCTCGTCTTATCAGGCCTACGAAAGCTAATCATCAcg                                   >  2:1598666‑M2/34‑99 (MQ=255)
                                                                 attGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAAtcatca                                     <  2:1777814‑M1/94‑1 (MQ=255)
                                                                 attGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc                                  <  1:579650‑M1/97‑1 (MQ=255)
                                                                 attGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc                                  <  1:527126‑M1/97‑1 (MQ=255)
                                                                  aGGCCGGATAAGGCGTTCACGCCGCATCCGGAAATCGTGCACAATGCCTGATGCGCCGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgcg                                 >  1:2057194/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGTGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc                                >  1:2235080/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc                                >  2:1397615/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTAGCAGGCCTACGAAAGCTAATCATCACgcgc                                >  1:1555230/1‑100 (MQ=255)
                                                                    gccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGGTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCt                               >  1:1659605‑M2/31‑100 (MQ=255)
                                                                    gccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGAGGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc                                  >  1:1144918‑M2/31‑97 (MQ=255)
                                                                    GCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCt                               <  1:1254083‑M1/100‑1 (MQ=255)
                                                                      CGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTgg                             >  1:2480263‑M1/1‑100 (MQ=255)
                                                                       GGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAAtcatcacgcagatcg                            <  1:2099923‑M1/100‑7 (MQ=255)
                                                                        GATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTa                           <  2:231950‑M1/100‑1 (MQ=255)
                                                                              gCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCg                     <  2:1334606/100‑1 (MQ=255)
                                                                              gCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCGTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATATCg                     >  1:401381/1‑100 (MQ=255)
                                                                                gTTCACGCCGCATCCGGCAATCGTGCACAATGTCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTa                   <  1:532366/100‑1 (MQ=255)
                                                                                  tCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAAt                 >  1:1863205/1‑100 (MQ=255)
                                                                                   cACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATc                <  2:2007125/100‑1 (MQ=255)
                                                                                   cACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATc                <  2:918975/100‑1 (MQ=255)
                                                                                     cgccgcATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCa              >  1:441579/1‑100 (MQ=255)
                                                                                          tatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTgg         >  2:2204988‑M2/9‑100 (MQ=255)
                                                                                           atccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTg          >  1:1322923‑M2/8‑98 (MQ=255)
                                                                                           atccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgc        <  2:426271‑M2/93‑1 (MQ=255)
                                                                                           atccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgc        <  2:1686089‑M2/93‑1 (MQ=255)
                                                                                             ccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgcgc      <  1:98622‑M2/95‑1 (MQ=255)
                                                                                             ccggcAATCGTGCACAATGCCTGACGCGACGCTGCCGCGTCTTAGCAGGCGTACGAAAGCTTATCATCACGCGCTGGTAATGTCGTAATCCATTTGgcgc      <  1:1598657‑M2/95‑1 (MQ=255)
                                                                                              cggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCa     >  2:243087‑M2/5‑100 (MQ=255)
                                                                                              cggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCa     <  1:1758918‑M2/96‑1 (MQ=255)
                                                                                               ggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgcgc      <  1:1472000‑M2/95‑1 (MQ=255)
                                                                                               ggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAg    >  1:2203011‑M2/4‑100 (MQ=255)
                                                                                               ggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAg    <  2:1656728‑M2/97‑1 (MQ=255)
                                                                                                  |                                                                                                  
TTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  >  NC_000913/3139557‑3139753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.