| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3427251 | NA (NA) | 9 (0.100) | 7/168 | NT | 30.3% | noncoding (1512/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4209670 = | 22 (0.240) | noncoding (1524/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
TGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGAC > NC_000913/4209571‑4209767 | gtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctac > 2:1622057‑M2/100‑100 (MQ=255)gtagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctac < 2:2346412‑M2/1‑1 (MQ=255) tagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCg > 2:1936362‑M2/99‑100 (MQ=255) tagaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaagataaggcggtgatccaaccgcacgttctcctac > 1:2488768‑M2/99‑99 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttctcctaCgg < 2:1362215‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:1113842‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:771908‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 2:1598341‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 2:2036857‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg > 1:2214780‑M2/98‑100 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 2:584162‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 1:1569188‑M2/3‑1 (MQ=255) agaggttttactgctcattttcatcagacaatcggtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg > 1:1557635‑M2/98‑100 (MQ=255) gaggttttactgctcattttcatcggacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCgg < 2:2240621‑M2/3‑1 (MQ=255) gaggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGt > 2:2085486‑M2/97‑100 (MQ=255) aggttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGtt < 1:40448‑M2/5‑1 (MQ=255) ctgcaaagtacgcttctttaaggtaaggaggtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGACGCGTACTTTGCAGTGCt > 1:242760‑M2/55‑100 (MQ=255) tGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGAATGTCTGATAGa > 2:1932539/1‑100 (MQ=11) aaGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGaaa < 1:632581/100‑1 (MQ=32) aGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAg < 2:2436617/100‑1 (MQ=32) ggtgatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAGtgaata > 1:406645‑M2/26‑98 (MQ=255) aaCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGaaaa < 2:2492266/100‑1 (MQ=33) aaCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGaaaa < 2:64523/100‑1 (MQ=32) cAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGc > 1:2366191/1‑100 (MQ=32) gatccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCa > 1:1906587‑M2/23‑100 (MQ=255) atccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAGTGAATAGCaa > 2:1794293‑M2/22‑100 (MQ=255) tccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAGTGAATAGCAAg > 2:1282765‑M2/21‑100 (MQ=255) ggTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAg > 1:466960/1‑100 (MQ=33) ccaaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAgg > 2:853107‑M2/20‑100 (MQ=255) caaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGc > 1:445143‑M2/19‑100 (MQ=255) caaccgcaggttcccctaCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGc > 2:1220224‑M2/19‑100 (MQ=255) caaccgcaggttcccctaCGGTTGGATCACCTCATTACGTTAAAGAACCGTTCTTTGCAGTGATCACACAGATTGTCTGATAGAAAGTGAAAAGCAAg > 1:1841651‑M2/19‑98 (MQ=255) aCCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGt > 2:1013622/1‑100 (MQ=33) ccGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTc > 2:1386227/1‑100 (MQ=33) ccGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTc > 2:2195434/1‑100 (MQ=33) cGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCt > 2:714017/1‑100 (MQ=33) cGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCt > 1:2361763/1‑100 (MQ=32) ggtggggAACCTGCGGTTGGATCACCTCCTTACCTTATAGAAGCGGTCTTCGCAGTGCTCACACTGATTGCCTGATAGAAAGTGAAAAGCAAGGCGTCtt < 1:2165741/97‑1 (MQ=11) gTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCtt < 2:343033/100‑1 (MQ=33) gTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCtt > 2:1686718/1‑100 (MQ=33) tAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTg < 1:2007107/100‑1 (MQ=33) aGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGc < 2:437509/100‑1 (MQ=33) aGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGc > 1:1302017/1‑100 (MQ=32) aGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGc > 2:1336735/1‑100 (MQ=33) ggggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCg > 2:411692/1‑100 (MQ=33) ggAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGaa > 1:1087746/1‑100 (MQ=32) gAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAg < 1:2014785/100‑1 (MQ=32) aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCa < 1:2225310/100‑1 (MQ=33) aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCa < 2:637574/100‑1 (MQ=33) aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCa < 1:736331/100‑1 (MQ=33) cTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGa > 2:1200241/1‑100 (MQ=33) tGCGGTTTGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGAc > 1:1626797/1‑100 (MQ=18) tGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGAc < 2:1245461/100‑1 (MQ=33) | TGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGAC > NC_000913/4209571‑4209767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |