New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4636809104 (1.130)5 (0.060) 5/164 NT 4.7% coding (114/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
?NC_000913 = 4636834 105 (1.240)coding (139/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 127 total aligned reads displayed.

GGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCC  >  NC_000913/4636737‑4636927
                                                                                                 |                                                                                             
ggtggcggtggcAGCCTGGTTCGTACTGTCCATTTTTGTCAAAGAATTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCTCAAcg                                                                                             >  2:2583774‑M2/1‑98 (MQ=255)
ggtggcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcg                                                                                             <  1:265768‑M2/100‑3 (MQ=255)
ggtggcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcg                                                                                             <  2:82519‑M2/100‑3 (MQ=255)
   ggcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttg                                                                                          <  2:938140‑M2/100‑6 (MQ=255)
    gcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgc                                                                                         >  2:379670‑M2/1‑94 (MQ=255)
    gcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgc                                                                                         >  2:2589218‑M2/1‑94 (MQ=255)
       gtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCaagatcggaag                                                                                      >  1:1999133/1‑91 (MQ=255)
         ggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCg                                                                                    <  2:1717976/100‑1 (MQ=255)
         ggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCCAAGAGCCACGAAGGGGACGTTGATCGACACCGCAAcgttgctagc                                                                                     <  2:2457116‑M2/99‑11 (MQ=255)
          gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                   <  2:1109934/100‑1 (MQ=255)
          gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                   <  1:1761130/100‑1 (MQ=255)
          gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                   >  1:595001/1‑100 (MQ=255)
          gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                   <  2:798284/100‑1 (MQ=255)
           cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAGGTTAAATGGGGCGTTCGAAGAGCAACGGAGGGGTCGTTGATCGACACCGCAAcgttgc                                                                                         <  1:743959‑M2/93‑7 (MQ=255)
           cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGCGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                  >  1:1463485/1‑100 (MQ=255)
           cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCg                                                                                    <  1:933376/98‑1 (MQ=255)
           cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                  >  2:1807360/1‑100 (MQ=255)
             gCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGc                                                                                >  1:668923/1‑100 (MQ=255)
                 ggTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgc                                                                            <  1:509704/100‑1 (MQ=255)
                 ggTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgc                                                                            <  1:2379000/100‑1 (MQ=255)
                  gTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcg                                                                           <  1:449521/100‑1 (MQ=255)
                   ttCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcgc                                                                          >  1:1110880/1‑100 (MQ=255)
                    ttgTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGcgcg                                                                         <  2:1965774/98‑1 (MQ=255)
                    tCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGcgcg                                                                         <  2:1451058/100‑1 (MQ=255)
                      gTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTc                                                                       >  1:2482697/1‑100 (MQ=255)
                        aCTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTccc                                                                     <  2:2439897/100‑1 (MQ=255)
                        aCTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTccc                                                                     <  2:2482716/100‑1 (MQ=255)
                         cTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCg                                                                    >  2:1182264/1‑100 (MQ=255)
                          tGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGa                                                                   >  1:826971/1‑100 (MQ=255)
                           ggCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAt                                                                  >  1:1912455/1‑100 (MQ=255)
                           ggCCATTTTTGTCAAAGAAGTTAAACCGGGCGCGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAt                                                                  >  2:2461301/1‑100 (MQ=255)
                              cATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTg                                                               <  2:139784/100‑1 (MQ=255)
                              cATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTg                                                               <  1:1149200/100‑1 (MQ=255)
                               aTTTTTGTCAAAGAAGTTAAACCGTGCTTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGc                                                              <  1:1615877/100‑1 (MQ=255)
                                tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGct                                                             >  2:482617/1‑100 (MQ=255)
                                   ttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGTTGGCGGAGCTGGCGCGTCCCGATTTGctctc                                                          <  1:2349537/100‑1 (MQ=255)
                                   ttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctctc                                                          <  2:2167402/100‑1 (MQ=255)
                                     gTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTg                                                        >  2:1765963/1‑100 (MQ=255)
                                      tCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgg                                                       <  1:1344352/100‑1 (MQ=255)
                                      tCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgg                                                       <  1:2215534/100‑1 (MQ=255)
                                      tCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCCATTTGCTCTCTgg                                                       <  2:1739411/100‑1 (MQ=255)
                                       cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGCGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                      >  2:1105665/1‑100 (MQ=255)
                                       cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                      >  1:250550/1‑100 (MQ=255)
                                       cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                      >  1:1309096/1‑100 (MQ=255)
                                       cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                      >  1:1811515/1‑100 (MQ=255)
                                       cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                      >  2:1073717/1‑100 (MQ=255)
                                       cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgg                                                       <  1:1768513/99‑1 (MQ=255)
                                        aaaGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgggg                                                     >  2:298603/1‑100 (MQ=255)
                                          agaagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGAc                                                   <  2:1826059/100‑1 (MQ=255)
                                          agaagTTAAACCGGGAGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctctc                                                          <  1:2349498/93‑1 (MQ=255)
                                           gaagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGAcc                                                  <  1:1212219/100‑1 (MQ=255)
                                            aagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGAccc                                                 <  1:1470680/100‑1 (MQ=255)
                                             agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGCTTTGCTCTCTGGGGAccc                                                 >  2:92553/1‑99 (MQ=255)
                                             agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                >  2:472360/1‑100 (MQ=255)
                                              gTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCaa                                               >  2:2127323/1‑100 (MQ=255)
                                              gTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTGGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                <  1:879260/99‑1 (MQ=255)
                                                tAAACCGGGCGTGCGAAGAGCCACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGATCTCTGGGGACCCaa                                               >  1:267328/1‑98 (MQ=255)
                                                tAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                             >  2:2494527/1‑100 (MQ=255)
                                                tAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                             >  1:335248/1‑100 (MQ=255)
                                                tAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                             >  1:1306390/1‑100 (MQ=255)
                                                tAAACCGGCCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                             <  1:2287185/100‑1 (MQ=255)
                                                  aaCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCa                                           >  2:1598540/1‑100 (MQ=255)
                                                    ccGGGCGTGCGAAGAGCAACGGAGGGGAGGTTGATCGACACCGCAACATTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCCTg                                         >  2:270651/1‑100 (MQ=255)
                                                    ccGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATg                                         <  2:2435858/100‑1 (MQ=255)
                                                      gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                       <  1:938137/100‑1 (MQ=255)
                                                            gCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctg                                 <  2:427196‑M2/100‑63 (MQ=255)
                                                            gCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTg                                 >  2:1951204/1‑100 (MQ=255)
                                                             cGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTgg                                >  2:593636/1‑100 (MQ=255)
                                                              gAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgcc                               <  1:1712828‑M2/100‑65 (MQ=255)
                                                              gAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGgc                               >  1:1155579/1‑100 (MQ=255)
                                                               aaGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGgcg                              <  2:100201/100‑1 (MQ=255)
                                                                  agCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAg                           <  2:335250/100‑1 (MQ=255)
                                                                   gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAgg                          >  2:2019107/1‑100 (MQ=255)
                                                                    cAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGc                         >  2:1035848/1‑100 (MQ=255)
                                                                     aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGGGCAGGCg                        <  2:2306167/100‑1 (MQ=255)
                                                                     aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCg                        <  1:1525799/100‑1 (MQ=255)
                                                                      aCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGt                       >  2:1574957/1‑100 (MQ=255)
                                                                       cGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGtt                      <  2:112784/100‑1 (MQ=255)
                                                                       cGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGtt                      >  2:1474811/1‑100 (MQ=255)
                                                                        ggAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                     >  2:1164095/1‑100 (MQ=255)
                                                                         gAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgccaccgccaccag                    <  1:44401‑M2/100‑76 (MQ=255)
                                                                         gAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTa                    >  1:1560852/1‑100 (MQ=255)
                                                                          aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                   >  1:393073/1‑100 (MQ=255)
                                                                             ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                <  2:2594136/100‑1 (MQ=255)
                                                                              gACGTTGATCGACACCGCAACGTTGTTGGCGGAGCTGGCGCGGCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAg               <  1:1258402/100‑1 (MQ=255)
                                                                                cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt             >  2:2443215/1‑100 (MQ=255)
                                                                                cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt             >  2:187223/1‑100 (MQ=255)
                                                                                cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt             <  2:393075/100‑1 (MQ=255)
                                                                                cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt             >  1:2278806/1‑100 (MQ=255)
                                                                                cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt             >  1:2232541/1‑100 (MQ=255)
                                                                                 gTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTa            >  2:1080392/1‑100 (MQ=255)
                                                                                  ttGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac           <  1:2305865/100‑1 (MQ=255)
                                                                                  ntGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac           >  1:1304481/2‑100 (MQ=255)
                                                                                    gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa         >  1:2167771/1‑100 (MQ=255)
                                                                                    gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa         >  2:460357/1‑100 (MQ=255)
                                                                                     aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaac        >  2:467083/1‑100 (MQ=255)
                                                                                       cGACACCGCAACGTTGCTGGCGCAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCAGGGACAACTGGCGCAGGCGTTTAATGAGCTacaa         >  1:1506585/1‑97 (MQ=255)
                                                                                        gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc     >  1:1984588/1‑100 (MQ=255)
                                                                                           acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc  <  1:1954365/100‑1 (MQ=255)
                                                                                            ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc   <  1:2219101/98‑1 (MQ=255)
                                                                                                 |                                                                                             
GGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCC  >  NC_000913/4636737‑4636927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.