| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,168,850 | T→C | 77.9% | intergenic (‑18/‑223) | ycfQ ← / → bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,168,850 | 0 | T | C | 77.9% | 132.4 / 32.0 | 72 | intergenic (‑18/‑223) | ycfQ/bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
| Reads supporting (aligned to +/- strand): ref base T (11/5); new base C (30/26); total (41/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 | |||||||||||
CCTTATCAAGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAA > NC_000913/1168751‑1168945 | ccTTATCAAGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGt > 2:2004902/1‑100 (MQ=255)ccTTATCAAGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGt > 1:2386541/1‑100 (MQ=255) tATCAAGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGAc < 2:2416870/100‑1 (MQ=255) cAAGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCAAAAC‑TTTTTTTTACAGAATGTATTGAGTCAGTTGCCATTATCCCGTTATACCTGGCGACt > 1:2386127/1‑98 (MQ=255) aaGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACtgtg > 1:1009479/1‑100 (MQ=255) aaGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACtgtg < 1:437675/100‑1 (MQ=255) aGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGtga > 1:841669/1‑100 (MQ=255) cgcgGCATCCCTGTCGCACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTTTTGAGTCAGTTGCCATGATGCCGTTGTACCTTGTGACTGtgaat > 1:23794/1‑100 (MQ=255) cgcgGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGCCGACTTtga > 1:2344569/1‑98 (MQ=255) gcgGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGtgaatg < 1:892560/100‑1 (MQ=255) ggCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGtgaatgaa > 2:1254225/1‑100 (MQ=255) cATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAg < 2:612789/100‑1 (MQ=255) cATCCCTGTCGAACACTTTTCGGCAGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAg < 2:373931/100‑1 (MQ=255) cccTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCATTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGtt < 1:425328/100‑1 (MQ=255) cccgTCGAACACTTTTGGGCGGCCACGGCTTTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGtt > 2:909034/4‑100 (MQ=255) cTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGttat < 2:421716/100‑1 (MQ=255) cTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGttat < 2:371772/100‑1 (MQ=255) gTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGttatta > 2:1023888/1‑100 (MQ=255) cGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATtata < 2:15688/100‑1 (MQ=255) cGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATtata > 2:1942137/1‑100 (MQ=255) aaCACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATaaa < 1:1156782/100‑1 (MQ=255) acTTTTGGGGGGCGACGTC‑TTTTTTGTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTTAATGAAAGGTTATTATaaaaa < 1:932984/99‑1 (MQ=255) ttttGGGCGGCCACGGC‑TTTTTTTTGCACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAaataa < 1:656973/100‑1 (MQ=255) ttGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATc < 2:55818/100‑1 (MQ=255) tGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCa < 1:191905/100‑1 (MQ=255) ggcggcCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCAcc > 2:1774252/1‑100 (MQ=255) ggcggcCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCAcc > 2:1956184/1‑100 (MQ=255) ggcggcCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCAcc > 2:686945/1‑100 (MQ=255) agcggcCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGACTGAAACGTTATTATAAAAATAATCAcc > 1:913911/2‑100 (MQ=255) gcCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCg > 1:1728456/1‑100 (MQ=255) cACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTTGCAACTGTGAGTGAAAGGTTATTATAAAAATAATCACCTCCGtt > 1:861320/1‑100 (MQ=255) cACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGtt > 2:191258/1‑100 (MQ=255) cACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGtt > 1:398332/1‑100 (MQ=255) cGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCa < 2:267538/100‑1 (MQ=255) gC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCAcn < 1:2084807/100‑2 (MQ=255) gC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCAcc < 2:193014/100‑1 (MQ=255) gC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCAcc < 1:1963393/100‑1 (MQ=255) gC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCAcc < 2:1268140/100‑1 (MQ=255) gC‑TTTTTTTTACACATTGTGTTGAGCCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCAcc < 2:980342/100‑1 (MQ=255) gC‑TTTTTGTTACACAGTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCAcc < 1:703990/100‑1 (MQ=255) tttttACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTcc < 2:2049098/100‑1 (MQ=255) ttttACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCa > 2:249615/1‑100 (MQ=255) acacATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATc > 2:2539117/1‑100 (MQ=255) acacATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATc < 2:1931044/100‑1 (MQ=255) acaTTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATccc < 2:262861/100‑1 (MQ=255) acaTTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATccc > 2:2331277/1‑100 (MQ=255) caTTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCa > 1:1547079/1‑100 (MQ=255) nttGCGTCAGTTGCCATGATGCCCTTGTACCCGCCGCCTGTGAATGAACGGTTATTATAAGAATAATCACCTACGCTCACCCGTCTACATCCAATaaaaa > 1:1043141/2‑100 (MQ=255) gtTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCATCTCCGTTCACCAGTCCAGATCCCATaaaaa > 1:2553185/1‑100 (MQ=255) ttGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaat > 2:2481849/1‑100 (MQ=255) tGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaata > 2:1646551/1‑100 (MQ=255) tGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaata < 1:228300/100‑1 (MQ=255) tGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaata > 1:632862/1‑100 (MQ=255) tGAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaata < 2:1050244/100‑1 (MQ=255) gAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAACAATCACATCCGTTCACCAGTCCAGATCCCATAAAaataa > 1:1814933/1‑100 (MQ=255) gAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaataa > 1:1227332/1‑100 (MQ=255) gAGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaataa > 1:1649289/1‑100 (MQ=255) aGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaataat < 2:1371221/100‑1 (MQ=255) aGTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAaataat > 1:1529030/1‑100 (MQ=255) gTCAGTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAAtt > 1:2287205/1‑100 (MQ=255) gTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCtt < 2:2380192/100‑1 (MQ=255) gTTGCCATGATGCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCtt > 2:2169425/1‑100 (MQ=255) tgatgCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTAttt > 1:1382210/1‑100 (MQ=255) tgatgCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTAttt > 1:2131756/1‑100 (MQ=255) gatgCCGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTa < 1:969031/100‑1 (MQ=255) tgCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAAc > 2:757044/1‑100 (MQ=255) nccGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACt > 2:1071308/2‑100 (MQ=255) cGTTGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGa > 2:1726479/1‑100 (MQ=255) gTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGaa > 2:276908/1‑100 (MQ=255) ttGTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGaaa < 2:614545/100‑1 (MQ=255) gTACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAAtt > 2:1782312/1‑100 (MQ=255) tACCTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAAttt > 2:2286718/1‑100 (MQ=255) ccTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTaa > 2:725327/1‑100 (MQ=255) cTGGCGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTaaa < 2:2028203/100‑1 (MQ=255) | CCTTATCAAGCGCGGCATCCCTGTCGAACACTTTTGGGCGGCCACGGC‑TTTTTTTTACACATTGTGTTGAGTCAGTTGCCATGATGCCGTTGTACCTGGTGACTGTGAATGAAAGGTTATTATAAAAATAATCACCTCCGTTCACCAGTCCAGATCCCATAAAAATAATTGCTTTCTATTTAACTGAAATTTAAA > NC_000913/1168751‑1168945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |