Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,187,092 G→C 21.0% intergenic (+22/+27) pepT → / ← roxA peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,187,0920GC21.0% 269.1 / 74.0 119intergenic (+22/+27)pepT/roxApeptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
Reads supporting (aligned to +/- strand):  ref base G (47/47);  new base C (15/10);  total (62/57)
Fisher's exact test for biased strand distribution p-value = 5.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.16e-01

Only 100 of 122 total aligned reads displayed.

TTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGC  >  NC_000913/1186994‑1187191
                                                                                                  |                                                                                                   
ttGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGa                                                                                                    <  2:2301029/100‑1 (MQ=255)
 tgtgACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAATGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGAt                                                                                                   >  1:1051999/1‑100 (MQ=255)
 tgtgACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGa                                                                                                    <  2:2203711/99‑1 (MQ=255)
   tgACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGc                                                                                                 >  2:1718948/1‑100 (MQ=255)
   tgACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGc                                                                                                 <  2:54004/100‑1 (MQ=255)
    gACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGACGTAAGCGAAAAGGGATGCGGCATGTGATGcc                                                                                                >  1:1981097/1‑100 (MQ=255)
    gACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc                                                                                                >  1:800370/1‑100 (MQ=255)
    gACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc                                                                                                <  2:2513790/100‑1 (MQ=255)
    gACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc                                                                                                >  2:899402/1‑100 (MQ=255)
      ctctGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGc                                                                                              >  1:1448015/1‑100 (MQ=255)
        ctGGAAGGTATGGAACAAGCGGTGCAGGTGACCGTCCGTATTGCCGAGATAACGGCGCAACGTAAGTAAGCGAAAAGGAATGCGGCATGTGATGGCGGAt                                                                                            >  1:212928/1‑100 (MQ=255)
         tGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATc                                                                                           <  1:1295590/100‑1 (MQ=255)
         tGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATc                                                                                           <  1:2336502/100‑1 (MQ=255)
         tGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATc                                                                                           <  2:1871287/100‑1 (MQ=255)
          ggAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCan                                                                                            <  2:928592/98‑2 (MQ=255)
          ggAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATcc                                                                                          >  2:123645/1‑100 (MQ=255)
          ggAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATcc                                                                                          <  2:1460665/100‑1 (MQ=255)
          ggAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATcc                                                                                          <  2:682294/100‑1 (MQ=255)
          ggAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATcc                                                                                          <  1:1971163/100‑1 (MQ=255)
              ggTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCt                                                                                      >  2:1855363/1‑100 (MQ=255)
                tATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTa                                                                                    <  2:842076/100‑1 (MQ=255)
                tATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTa                                                                                    >  1:2300192/1‑100 (MQ=255)
                tATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTa                                                                                    >  2:2350151/1‑100 (MQ=255)
                   ggAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGATGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt                                                                                 <  1:611106/100‑1 (MQ=255)
                    gAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATc                                                                                >  2:1536237/1‑100 (MQ=255)
                    gAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATc                                                                                <  1:933104/100‑1 (MQ=255)
                    gAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTGAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATc                                                                                >  1:1377513/1‑100 (MQ=255)
                        aaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa                                                                            <  1:1908184/100‑1 (MQ=255)
                        aaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa                                                                            >  2:509088/1‑100 (MQ=255)
                         aGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTATCGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAAc                                                                           <  1:1365718/100‑1 (MQ=255)
                         aGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAAc                                                                           <  2:157904/100‑1 (MQ=255)
                          gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACt                                                                          >  2:504391/1‑100 (MQ=255)
                              tGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAcc                                                                      <  2:375573/100‑1 (MQ=255)
                              tGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAcc                                                                      <  2:375690/100‑1 (MQ=255)
                              tGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAcc                                                                      <  2:1054692/100‑1 (MQ=255)
                               gCAGGTGATCGGCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGAGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAcc                                                                      <  1:2218105/99‑1 (MQ=255)
                                   gTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCg                                                                 <  2:2043746/100‑1 (MQ=255)
                                   gTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCg                                                                 >  1:2155929/1‑100 (MQ=255)
                                    tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCga                                                                >  2:2259461/1‑100 (MQ=255)
                                       tCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga                                                             <  2:1950674/100‑1 (MQ=255)
                                        cGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGAAAGAGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa                                                            <  1:1063824/100‑1 (MQ=255)
                                         gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTTGAAGAAc                                                           <  2:1361547/100‑1 (MQ=255)
                                         gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc                                                           >  2:986770/1‑100 (MQ=255)
                                         gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc                                                           <  1:149918/100‑1 (MQ=255)
                                          tCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc                                                          <  2:2165172/100‑1 (MQ=255)
                                          tCCGTATTGCCGAGTTAAAGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc                                                          <  2:744479/100‑1 (MQ=255)
                                          tCCGTATTGCCGAGTGAACGGCGCAACGGAGGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcn                                                          <  1:546700/100‑2 (MQ=255)
                                           ccGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCa                                                         <  2:1405963/100‑1 (MQ=255)
                                            cGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCaa                                                        >  2:2278316/1‑100 (MQ=255)
                                             gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt                                                       <  1:2033485/100‑1 (MQ=255)
                                             gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt                                                       <  2:618315/100‑1 (MQ=255)
                                              tATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCAGCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt                                                       <  2:808241/99‑1 (MQ=255)
                                                ttGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAcc                                                    >  1:1352213/1‑100 (MQ=255)
                                                    cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt                                                >  2:984661/1‑100 (MQ=255)
                                                    cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt                                                >  1:1136596/1‑100 (MQ=255)
                                                    cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt                                                <  2:1474890/100‑1 (MQ=255)
                                                     gAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt                                                >  1:2187496/1‑99 (MQ=255)
                                                     gAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTa                                               >  1:634309/1‑100 (MQ=255)
                                                       gTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAtt                                             <  2:1865571/100‑1 (MQ=255)
                                                       gTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAtt                                             <  2:630583/100‑1 (MQ=255)
                                                       gTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAtt                                             <  2:630584/100‑1 (MQ=255)
                                                         tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa                                           <  2:2155943/100‑1 (MQ=255)
                                                         tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa                                           >  2:1103018/1‑100 (MQ=255)
                                                         tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa                                           >  2:447970/1‑100 (MQ=255)
                                                           aCGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCAAAACTTACCCTTCGAAGAACCAATTCCCGCTATTGAcc                                         <  1:1602362/100‑1 (MQ=255)
                                                            cGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCa                                        >  1:709147/1‑100 (MQ=255)
                                                              gcggAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCGTCGAAGAACCAATACCCGCTATTGACCAgc                                      <  1:575346/100‑1 (MQ=255)
                                                              gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAACTCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc                                      >  1:885493/1‑100 (MQ=255)
                                                              gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc                                      >  2:564786/1‑100 (MQ=255)
                                                                      gAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGa                               >  2:121895/1‑99 (MQ=255)
                                                                          tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATc                          >  1:583498/1‑100 (MQ=255)
                                                                            aGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATcgc                        >  1:1497296/1‑100 (MQ=255)
                                                                              cGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGatgctcgcgg                      <  1:986767/100‑10 (MQ=255)
                                                                              cGAAAAGGGATGCGGCATGTGATGCAGCATCCGGCTAAAATCCAAACTTACACTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGa                      >  1:337845/1‑100 (MQ=255)
                                                                               gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAg                     >  1:755580/1‑100 (MQ=255)
                                                                               gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAg                     <  2:26450/100‑1 (MQ=255)
                                                                                aaaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAgg                    <  1:1837497/100‑1 (MQ=255)
                                                                                aaaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAgg                    <  1:1128014/100‑1 (MQ=255)
                                                                                   ccggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAAt                 >  1:2527908/3‑100 (MQ=38)
                                                                                    gggATGCGGCATGTGATGCCGCATCCGGCTGAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATg                <  1:1286490/100‑1 (MQ=255)
                                                                                     ggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATcgcggcgctggt               <  2:1448023/100‑9 (MQ=255)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATg                >  1:433174/1‑99 (MQ=39)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  2:1133183/1‑100 (MQ=255)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  2:1682329/1‑100 (MQ=255)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  1:433292/1‑100 (MQ=255)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  2:859398/1‑100 (MQ=255)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  2:507304/1‑100 (MQ=255)
                                                                                     ggATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  1:1089291/1‑100 (MQ=255)
                                                                                     ggATGCGCCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa               >  2:1352685/1‑100 (MQ=255)
                                                                                      gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGTATCGCGAGGAATGAc              >  2:2550930/1‑100 (MQ=255)
                                                                                      gATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGAc              >  1:348009/1‑100 (MQ=255)
                                                                                      gATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGAc              >  1:2416896/1‑100 (MQ=255)
                                                                                       aTGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACg             >  2:777899/1‑100 (MQ=255)
                                                                                         gCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGa           >  2:2489253/1‑100 (MQ=255)
                                                                                           ggCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATc         >  2:2139304/1‑100 (MQ=255)
                                                                                           ggCATGTGAGGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATc         <  2:1772458/100‑1 (MQ=255)
                                                                                            gCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCt        <  2:2445262/100‑1 (MQ=255)
                                                                                                gtgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCa    >  1:2522823/1‑100 (MQ=255)
                                                                                                 tgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAg   <  2:2269523/100‑1 (MQ=255)
                                                                                                  gATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAgc  <  1:780168/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
TTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGC  >  NC_000913/1186994‑1187191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: