Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,386,750 | C→G | 16.1% | L11V (CTC→GTC) | tyrR → | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,386,750 | 0 | C | G | 16.1% | 205.2 / 33.6 | 81 | L11V (CTC→GTC) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
Reads supporting (aligned to +/- strand): ref base C (35/33); new base G (4/9); total (39/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.30e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.99e-01 |
CTTCCTGCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTCAATTTTG > NC_000913/1386655‑1386849 | cTTCCTGCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCgg > 2:576556/1‑100 (MQ=255) tCCTGCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTc < 2:753905/100‑1 (MQ=255) ccTGCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCt < 2:1327680/100‑1 (MQ=255) cTGCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTg > 1:1471487/1‑100 (MQ=255) gCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttca < 2:1073523/100‑4 (MQ=255) gCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttca < 1:2405153/100‑4 (MQ=255) gCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGAc < 2:221554/100‑1 (MQ=255) cTATCCAAATAGTGTCATATCATCATCTTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGAcc > 2:1577854/1‑100 (MQ=255) cTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttcac < 1:100865/100‑5 (MQ=255) cTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttcac < 2:2414186/100‑5 (MQ=255) cTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttcac < 1:2392912/100‑5 (MQ=255) tATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGACTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttcaca < 1:1391264/100‑6 (MQ=255) tCCAAATAGTGTCATATCCTCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttcaca < 1:300164/98‑6 (MQ=255) tCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCcgc < 2:1133653/100‑1 (MQ=255) tCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGGGAAGACCGAGTCGGTCttcaca < 2:1208135/98‑6 (MQ=255) tCCAAATAGTGTCATATCATCATATTAATCGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGAGTCGGTCttcacaaa < 2:1245372/100‑8 (MQ=255) ccAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCcgcg > 2:1263132/1‑100 (MQ=255) gtgtCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACt > 2:511746/1‑100 (MQ=255) tgtCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCCAATTACTc > 1:2369400/1‑100 (MQ=255) gtCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCg > 2:116059/1‑100 (MQ=255) gtCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCg > 2:1466557/1‑100 (MQ=255) gtCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCg > 2:1346188/1‑100 (MQ=255) tCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGa > 2:2094900/1‑100 (MQ=255) cATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGAt > 2:1837229/1‑100 (MQ=255) atatCATCATATTAATTGTACTTTTTTCCGGTGAAGGTTCCCACCAGCCTGGAAGTATTTGGTGGAGACCGACTCGGTCTGACCCGCGAATTACTCGGTc < 1:2161254/100‑1 (MQ=255) tatCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATcn < 1:928713/100‑2 (MQ=255) catcatATTAATTGTTCTTTTTTTAGTTGAATGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTATGACCCGCGAATTACTCGATCTACt > 1:1164282/1‑100 (MQ=255) catcatATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCTGCGAATTACTCGATCTa > 1:199536/1‑98 (MQ=255) atcatATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTc < 1:34256/100‑1 (MQ=255) tatTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGc < 2:924491/100‑1 (MQ=255) atTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCt < 2:1101390/100‑1 (MQ=255) atTAATTGTTCTTTTTTCAGCTGAAGCTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTATTCGATCTACTCGt < 1:1602444/97‑1 (MQ=255) atTAATGTTTATTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTTGGTCGGACCCGCGAATTACTCGATCTACTCGTGc < 1:1486675/99‑1 (MQ=255) tGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAgg < 2:1511617/100‑1 (MQ=255) gTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGc > 1:768421/1‑100 (MQ=255) ttCTTTTTTCAGGTGAAGGTTCACATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAagag > 1:2367384/1‑97 (MQ=255) cTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCAtt > 2:179138/1‑100 (MQ=255) cTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCAtt > 1:184003/1‑100 (MQ=255) cTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCAtt < 1:1466549/100‑1 (MQ=255) cTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCAtt < 1:1590561/100‑1 (MQ=255) cTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCAtt > 2:192291/1‑100 (MQ=255) ttttttGAGGTGAAGGTTCCCATGTGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTg < 1:395617/100‑1 (MQ=255) ttttttCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTg < 2:2306714/100‑1 (MQ=255) tttCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGAtt > 2:2169989/1‑100 (MQ=255) ttCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGAttt > 1:2186394/1‑100 (MQ=255) ttCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGAttt < 2:1029286/100‑1 (MQ=255) cAGGTGAAGGTTCCCATGCGTCTGGAGGGCGTTTGTGCCGACCGACTCGGTCTGCGCCGCGATTTACTCGATCTACTCGTCCTAAGCGGCAt > 1:430673/1‑92 (MQ=255) cAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTAGATCTACTCGTGCTAAGAGGCATTGATTTAc > 1:1471481/1‑100 (MQ=255) ggTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTAcgc > 1:2377836/1‑100 (MQ=255) ggTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTAcgc < 1:972590/100‑1 (MQ=255) tGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCgg < 1:2177856/100‑1 (MQ=255) ggTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTAtt > 2:127987/1‑100 (MQ=255) ggTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGGGCTAAGAGGCATTGATTTACGCGGTAtt < 2:1421728/100‑1 (MQ=255) ttCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTga < 2:1060529/100‑1 (MQ=255) ttCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTga < 2:435851/100‑1 (MQ=255) ttCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTga > 1:470493/1‑100 (MQ=255) tCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTgag < 2:1939718/100‑1 (MQ=255) gCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGAt < 2:1043241/100‑1 (MQ=255) cGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATc > 2:1071174/1‑100 (MQ=255) cGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATc > 1:790358/1‑100 (MQ=255) tGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCAt > 1:365905/1‑100 (MQ=255) gAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTg < 2:790361/100‑1 (MQ=255) gAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTg < 1:12460/100‑1 (MQ=255) gAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTg < 1:277663/100‑1 (MQ=255) aGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTgg < 2:1035080/99‑1 (MQ=255) gTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGc < 1:1346180/100‑1 (MQ=255) cTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGa > 1:452592/1‑100 (MQ=255) ttttGTGAATACCGACTCGGTGTGACTCGCGAATTACTCGATCTACTCGTGCTAGGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGaa < 1:505650/100‑1 (MQ=255) gcgggtcaGACCGAGTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAAt > 1:944569/8‑100 (MQ=255) tgtgAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCt > 2:507082/1‑100 (MQ=255) tgtgAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACGCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCt < 1:92695/100‑1 (MQ=255) gggtcaGACCGAGTCGGTCTGACCCGCGAATTACTCGATCTCCTCGTGCTAAGAGGCAGTGATTTACGCGGTATTGAGATTGAGCCCATTGGGCGAATCt > 1:1281000/6‑100 (MQ=255) ggtcaGACCGAGTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTa > 2:1258760/5‑100 (MQ=255) ggtcaGACCGAGTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTa > 1:640696/5‑100 (MQ=255) tgAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTAc > 2:2029406/1‑100 (MQ=255) gAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTATGCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTAcc < 1:2293602/100‑1 (MQ=255) gAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTAcc < 2:2593421/100‑1 (MQ=255) aGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTc > 1:902728/1‑100 (MQ=255) aCCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTCaa > 1:1261227/1‑100 (MQ=255) aCCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTCaa > 2:1512545/1‑100 (MQ=255) gACTCGGTATGACCCGCGAATTACTGGATCTACTCGTGCTAAGAGGCATGGGTTTACGCGGTATTGGGATTGATCCCACTGGGCGAATCTaac > 1:1738982/1‑91 (MQ=255) cTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTCAATTTTg > 2:730455/1‑100 (MQ=255) cTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTCAATTTTg < 1:799401/100‑1 (MQ=255) | CTTCCTGCTATCCAAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGAAGACCGACTCGGTCTGACCCGCGAATTACTCGATCTACTCGTGCTAAGAGGCATTGATTTACGCGGTATTGAGATTGATCCCATTGGGCGAATCTACCTCAATTTTG > NC_000913/1386655‑1386849 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |