Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,890,495 | G→A | 19.0% | A13V (GCA→GTA) | yeaY ← | Slp family lipoprotein, RpoE‑regulated |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,890,495 | 0 | G | A | 19.0% | 182.4 / 34.1 | 84 | A13V (GCA→GTA) | yeaY | Slp family lipoprotein, RpoE‑regulated |
Reads supporting (aligned to +/- strand): ref base G (41/27); new base A (10/6); total (51/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.75e-01 |
CTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTC > NC_000913/1890396‑1890593 | cTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTg < 1:1004331/100‑1 (MQ=255) catcaCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACATTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGcc > 1:1407700/1‑100 (MQ=255) catcaCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGcc > 2:57250/1‑100 (MQ=255) atcaCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCa > 2:1339700/1‑100 (MQ=255) tcaCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAg < 1:1544169/100‑1 (MQ=255) caCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGt > 2:691338/1‑100 (MQ=255) caCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGt > 2:472447/1‑100 (MQ=255) ccGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATg < 2:2553930/100‑1 (MQ=255) aCTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCtt > 1:799903/1‑100 (MQ=255) tAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTg < 1:666174/100‑1 (MQ=255) tAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTg < 1:25219/100‑1 (MQ=255) tAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTg < 1:23574/100‑1 (MQ=255) tAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTg > 1:1724741/1‑100 (MQ=255) aaaTCTTGTTGCGGCGTGGGCCTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGa < 1:1140662/100‑1 (MQ=255) aaaTCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGa < 1:846698/100‑1 (MQ=255) aaaTCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGa > 1:768262/1‑100 (MQ=255) aTCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATa > 1:218458/1‑100 (MQ=255) ttgttgTGGCGTGGGATTGCTGCCTTTAATGGCGTGCGGTCGAGTTGCACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATa < 1:2412514/97‑1 (MQ=255) ttgttgCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACa < 1:971857/100‑1 (MQ=255) ggcgTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCtttt < 2:38064/100‑1 (MQ=255) ggcgTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCtttt < 1:116072/100‑1 (MQ=255) gcgTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTg > 2:2283361/1‑100 (MQ=255) cgTGGGCCTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCATCATTAGCGTAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGa < 1:120373/100‑1 (MQ=255) tGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAAc < 2:2175358/100‑1 (MQ=255) ggACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCg > 2:589781/1‑100 (MQ=255) gACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGc > 2:2522355/1‑100 (MQ=255) ctgctgCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGcc > 2:2349389/1‑99 (MQ=255) tgctgcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCAt > 2:2394101/1‑100 (MQ=255) gctgcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATg < 2:1540087/100‑1 (MQ=255) gctgcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATg > 1:1287140/1‑100 (MQ=255) ctgcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATgg < 2:2480592/100‑1 (MQ=255) tgcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGt < 2:1614024/100‑1 (MQ=255) gcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTg > 2:1816902/1‑100 (MQ=255) gcCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTg > 1:1756533/1‑100 (MQ=255) ccTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATGCTTTTGAACCGCCATGGTGc < 1:1584342/100‑1 (MQ=255) cTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCg > 2:626629/1‑100 (MQ=255) cTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCg > 2:1364000/1‑100 (MQ=255) cTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCg > 1:1008102/1‑100 (MQ=255) tttAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTCCGa > 1:746148/1‑100 (MQ=255) ttAATGGCGTCCGGCACAGTGACACAACCGCTCATTATTAGCGCAAACGTACCTACTAGTATGCCTTTGATAACATTCTTTTGAGCCGCCATGGTGCGAc < 2:2447592/100‑1 (MQ=255) ttAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGAc > 1:639368/1‑100 (MQ=255) ttAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGAc > 1:1231947/1‑100 (MQ=255) tAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACt > 1:344853/1‑100 (MQ=255) tAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACt > 1:618380/1‑100 (MQ=255) tAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACt > 2:943997/1‑100 (MQ=255) tAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACt < 2:903104/100‑1 (MQ=255) aaTGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTc > 2:790470/1‑100 (MQ=255) aTGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTcc > 2:854420/1‑100 (MQ=255) ccGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCttttttt < 2:2100774/100‑1 (MQ=255) ccGGCACAGCGCCACAACCGCTCAGCATTAGCGCAAACGTAACTGCCAGTATTCCTTTTATTACTTTCTTTTGAACCGCCATGTTGCGTGTCCttttttt < 1:212594/100‑1 (MQ=255) cGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtc > 1:1472575/1‑100 (MQ=255) cGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtc > 2:2361724/1‑100 (MQ=255) cGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtc > 2:2511989/1‑100 (MQ=255) ggCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtct > 2:1216565/1‑100 (MQ=255) ggCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtct > 2:111380/1‑100 (MQ=255) gCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtctc > 2:93988/1‑100 (MQ=255) gCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtctc > 2:813688/1‑100 (MQ=255) caGTGACACAACCTCTCAGCATTAGAGCAAGCGTACCGGCCAGTATGCCTTGGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAgg < 1:1027094/100‑1 (MQ=255) acaACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATAct < 1:1913503/100‑1 (MQ=255) caACCGCTCAGCATTAGCGCCAACGTACCTGCCAGTATGCCTTTGATAACACTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGTGCATActc > 1:457161/1‑100 (MQ=255) caACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGCACCGCCATGGTGCGACTCCTTTTTTTCTCAGGTCATActc > 1:2259163/1‑100 (MQ=255) caACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATActc > 2:46063/1‑100 (MQ=255) gCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAg < 1:14838/100‑1 (MQ=255) gCTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAg > 2:1008335/1‑100 (MQ=255) cTCAGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGa < 1:673878/100‑1 (MQ=255) cAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGatt > 1:541356/1‑100 (MQ=255) aGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGattc > 2:976612/1‑100 (MQ=255) aGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGattc < 2:719154/100‑1 (MQ=255) aGCATTAGCGCAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGattc < 2:1545135/100‑1 (MQ=255) gCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGattca < 1:417055/100‑1 (MQ=255) aGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCtt < 2:2449368/100‑1 (MQ=255) gcgcAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCttt > 2:60254/1‑100 (MQ=255) cgcAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTg < 1:2180150/100‑1 (MQ=255) cgcAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTg > 2:303370/1‑100 (MQ=255) cgcAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTg > 2:1934170/1‑100 (MQ=255) cgcAAACGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTg < 2:988626/100‑1 (MQ=255) gcAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGc < 1:303367/100‑1 (MQ=255) aaCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCg < 1:1914391/100‑1 (MQ=255) cGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTTCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCgg > 2:1698150/1‑99 (MQ=255) cGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGa > 2:418866/1‑100 (MQ=255) cGTACCTACCAGTATGCCTTTGATAACATTCTTTTGAACCGACATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGa > 1:1418412/1‑100 (MQ=255) gTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGCTTCATTCTTTGCCCGGaa > 2:2140724/1‑100 (MQ=255) aCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGt > 2:462536/1‑100 (MQ=255) tGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTttc > 2:2043004/1‑100 (MQ=255) tGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTttc > 2:1792293/1‑100 (MQ=255) | CTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCACAGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTC > NC_000913/1890396‑1890593 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |