Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,814,174 T→A 22.4% intergenic (+20/+44) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,814,1740TA22.4% 311.9 / 85.4 147intergenic (+20/+44)emrB/luxSmultidrug efflux system protein/S‑ribosylhomocysteine lyase
Reads supporting (aligned to +/- strand):  ref base T (47/67);  new base A (16/17);  total (63/84)
Fisher's exact test for biased strand distribution p-value = 5.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01

Only 100 of 152 total aligned reads displayed.

ATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGT  >  NC_000913/2814076‑2814273
                                                                                                  |                                                                                                   
 ttCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAttt                                                                                                   <  1:2323530/100‑1 (MQ=255)
   ccTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGa                                                                                                 >  2:448641/1‑100 (MQ=255)
    cTCGTCCTGCGGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGa                                                                                                 <  1:2297017/99‑1 (MQ=255)
         ccTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGc                                                                                           <  1:1079461/100‑1 (MQ=255)
         ccTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGc                                                                                           <  2:2369803/100‑1 (MQ=255)
          ctgctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCt                                                                                          >  2:386787/1‑100 (MQ=255)
          ctgctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCt                                                                                          <  1:1020227/100‑1 (MQ=255)
          ctgctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCt                                                                                          <  1:709494/100‑1 (MQ=255)
          ctgctgGGGCTGGTGTGGTTTGCTAAACCGCAATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCt                                                                                          <  2:169407/100‑1 (MQ=255)
           tgctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCtt                                                                                         <  2:1051171/100‑1 (MQ=255)
           tgctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCtt                                                                                         <  1:2358571/100‑1 (MQ=255)
            gctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCttt                                                                                        >  2:388472/1‑100 (MQ=255)
            gctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCtta                                                                                        <  2:2386238/100‑2 (MQ=255)
            gctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCtta                                                                                        <  1:299638/100‑2 (MQ=255)
             ctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCttag                                                                                       <  1:1588052/100‑3 (MQ=255)
              tgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCttttt                                                                                      <  1:89965/100‑1 (MQ=255)
               ggggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCtttttt                                                                                     >  2:1476625/1‑100 (MQ=255)
               ggggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCttagtt                                                                                     <  1:1526739/100‑5 (MQ=255)
                gggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTc                                                                                    <  2:2587582/100‑1 (MQ=255)
                gggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTc                                                                                    <  2:9320/100‑1 (MQ=255)
                gggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCttagttg                                                                                    <  1:538417/100‑6 (MQ=38)
                 ggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAGCTGGCTTTTTTCa                                                                                   <  1:580227/100‑1 (MQ=255)
                 ggCTGGTGTGGTGTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCAAATGAACTGGCttagttg                                                                                    <  1:1401050/99‑6 (MQ=38)
                  gCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaa                                                                                  >  1:1921143/1‑100 (MQ=255)
                   cTGGTGTGGTTTGGTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaat                                                                                 <  1:2576521/100‑1 (MQ=255)
                   cTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaat                                                                                 <  2:1059207/100‑1 (MQ=255)
                   cTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaat                                                                                 >  1:293222/1‑100 (MQ=255)
                   cTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaat                                                                                 <  2:1529456/100‑1 (MQ=255)
                   cTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaat                                                                                 >  1:514158/1‑100 (MQ=255)
                   cTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaat                                                                                 <  2:1009647/100‑1 (MQ=255)
                     cgtgtGGTATGCTCAACCGCCATGTGGCGCAAGTGGAGGCGGAGGCGGTGCGCAGTAACTACCACTGAGCCTGTTAATTTGAACTGGATTATTTCaa                                                                                  <  1:1139013/96‑1 (MQ=255)
                      gtgtGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaattaa                                                                              <  2:2566963/100‑1 (MQ=255)
                       tgtgGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaattaat                                                                             <  2:588315/100‑1 (MQ=255)
                           gTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATtgtg                                                                         <  2:1058605/100‑1 (MQ=255)
                               gCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGa                                                                     >  1:1829197/1‑100 (MQ=255)
                               gCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGa                                                                     >  2:230561/1‑100 (MQ=255)
                                cTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGTGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGAt                                                                    <  2:219310/100‑1 (MQ=255)
                                  aaaCCGCTATTTGGCGCAGGTGGCGGTGGAGGCGTGGCGCAATAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAg                                                                  <  1:2454132/100‑1 (MQ=255)
                                   aaCCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGt                                                                 <  2:77087/100‑1 (MQ=255)
                                     ccGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGttt                                                               >  2:1799370/1‑100 (MQ=255)
                                     ccGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGttt                                                               >  2:131217/1‑100 (MQ=255)
                                     ccGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGttt                                                               >  1:1977439/1‑100 (MQ=255)
                                     ccGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTAGAACTGGCTTTTTTCAATTAATTGTGAAGATAGttt                                                               >  1:2478372/1‑100 (MQ=255)
                                     ccGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGGTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGgtt                                                               >  1:1786720/1‑100 (MQ=255)
                                      cGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTa                                                              <  1:309083/100‑1 (MQ=255)
                                       gCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTAc                                                             <  2:2178457/100‑1 (MQ=255)
                                       gCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTAc                                                             >  2:303391/1‑100 (MQ=255)
                                         cATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTg                                                           <  1:1661803/100‑1 (MQ=255)
                                         cATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTg                                                           <  2:2090826/100‑1 (MQ=255)
                                          aTTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGa                                                          >  2:1856105/1‑100 (MQ=255)
                                            ttGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACt                                                        >  2:2024299/1‑100 (MQ=255)
                                            ttGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACt                                                        <  1:373387/100‑1 (MQ=255)
                                             tGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTa                                                       >  1:1036161/1‑100 (MQ=255)
                                              ggCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAg                                                      >  2:789827/1‑100 (MQ=255)
                                                 gcAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGAtg                                                   <  1:206607/100‑1 (MQ=255)
                                                 gcAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGAtg                                                   <  2:1801992/100‑1 (MQ=255)
                                                  cAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGAtgt                                                  >  2:304504/1‑100 (MQ=255)
                                                   aGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGAtgtg                                                 <  1:1476616/100‑1 (MQ=255)
                                                    ggTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGc                                                <  1:448639/100‑1 (MQ=255)
                                                    ggTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGc                                                <  2:63695/100‑1 (MQ=255)
                                                         cggcggAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTc                                           >  2:1540404/1‑100 (MQ=255)
                                                         cggcggAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTc                                           >  2:2252387/1‑100 (MQ=255)
                                                            cggAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTg                                        <  1:1896337/100‑1 (MQ=255)
                                                            cggAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTg                                        <  1:2449807/100‑1 (MQ=255)
                                                               aGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAGCTGGCTTTTTTTAATTAATTGTGAAGACAGATTACCGACTAGATGTGCAGTTCCTGCaa                                     >  1:252377/1‑100 (MQ=255)
                                                               aGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCaa                                     >  1:983279/1‑100 (MQ=255)
                                                                ggCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAAc                                    <  2:811753/100‑1 (MQ=255)
                                                                    gTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTtct                                <  2:2093184/100‑1 (MQ=255)
                                                                        gcACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCttt                            <  1:424113/100‑1 (MQ=255)
                                                                          aCTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCg                          <  2:2512786/100‑1 (MQ=255)
                                                                            tAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGc                        <  2:1187486/100‑1 (MQ=255)
                                                                            tAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGc                        <  1:2043865/100‑1 (MQ=255)
                                                                               attgaaaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATAAATTGTGAAGATAGTTTACTGACTCGATGTGCAGTTCCTGCAACTTTTCTCTCGGCAGt                     >  1:2265899/9‑100 (MQ=25)
                                                                                tACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAATATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTg                    <  1:253083/100‑1 (MQ=255)
                                                                                tACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTg                    <  1:2588237/100‑1 (MQ=255)
                                                                                tACAACTAAGCCAGTTCATTTAAACTGGCTCTTTTCACTTAATTGTGAAGATAGTTCACTGACTCGATATGCAATTCCTTCAACTTCTCTTCCGGCAGt                     >  1:2207543/1‑99 (MQ=255)
                                                                                  gaaaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGcc                  >  2:1868420/6‑100 (MQ=38)
                                                                                  gaaaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCCGCAACTTCTCTTTCGGCAGTGcc                  >  2:18442/6‑100 (MQ=38)
                                                                                  cAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGcc                  <  2:1786729/100‑1 (MQ=255)
                                                                                  cAACTAAGCCAGTTCATTTGAACTGGCGTTTTTCAATCAATCGTGAAGATAGTTTACTGACTAGATGTGGAGTTCCTGCAACTTCGCGCTCGGCAGTgtc                  <  1:2520222/100‑3 (MQ=255)
                                                                                   aaaaaaGCCAGTTCAAATGAACTTGCTTTTTTCAATTAATTGTGAAGATATTTTCCTGACTATATGTTCAGTTCCTGCAACTTCTCTTTCGGCAGt                     >  1:536865/5‑96 (MQ=37)
                                                                                   aaaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCa                 >  2:1290521/5‑100 (MQ=39)
                                                                                    aaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAg                >  1:1294021/4‑100 (MQ=39)
                                                                                    aaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCCGCAACTTCTCTTTCGGCAGTGCCAg                <  1:18441/97‑1 (MQ=38)
                                                                                    aCTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAg                <  1:742687/100‑1 (MQ=255)
                                                                                     atctgCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGt               <  2:1664422/96‑1 (MQ=255)
                                                                                      aaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGtt              >  2:742104/2‑100 (MQ=255)
                                                                                       aaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttc             >  2:1904701/1‑100 (MQ=255)
                                                                                        aGCCAGTTCAAATGAACTGGCTTTTTTCAATGAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttct            >  2:1807398/1‑100 (MQ=255)
                                                                                         gCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGtagat           >  1:1664413/1‑96 (MQ=255)
                                                                                           cAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCg         <  1:1879891/100‑1 (MQ=255)
                                                                                            aGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGt        >  2:262726/1‑100 (MQ=255)
                                                                                               tCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGc     <  1:51329/100‑1 (MQ=255)
                                                                                               tCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGc     <  1:1187727/100‑1 (MQ=255)
                                                                                               tCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGc     <  1:1843439/100‑1 (MQ=255)
                                                                                                cATTTGAACTGGCTTTTTTCAATTAATTGTGAACATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCt    >  1:1552323/1‑100 (MQ=255)
                                                                                                cATTTGAACTGGCGTTTTTTTTTTTTTTTTGAAGATAGCTTACTGACTAGATGTGCATTTTCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTTCt    >  1:1600221/1‑100 (MQ=255)
                                                                                                  tttGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGt  <  2:457478/100‑1 (MQ=255)
                                                                                                  tttGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGt  >  2:1202434/1‑100 (MQ=255)
                                                                                                  tttGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGt  <  2:1555847/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
ATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGT  >  NC_000913/2814076‑2814273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: