Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,090,229 G→A 15.5% G159S (GGT→AGT)  yggI → Zn‑dependent metalloprotease‑related protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,090,2290GA15.5% 246.9 / 32.3 103G159S (GGT→AGT) yggIZn‑dependent metalloprotease‑related protein
Reads supporting (aligned to +/- strand):  ref base G (42/45);  new base A (9/7);  total (51/52)
Fisher's exact test for biased strand distribution p-value = 5.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.29e-01

Only 100 of 103 total aligned reads displayed.

CTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCG  >  NC_000913/3090132‑3090327
                                                                                                 |                                                                                                  
cTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGt                                                                                                  <  1:995717/100‑1 (MQ=255)
cTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGt                                                                                                  <  1:791567/100‑1 (MQ=255)
   ccccTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTAGTGGCGAGGCCGTCTATCGCTGTGCTCACTGCGGTGa                                                                                                >  1:421080/1‑99 (MQ=255)
    cccTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAAc                                                                                              >  1:678162/1‑100 (MQ=255)
    cccTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAAc                                                                                              >  2:445191/1‑100 (MQ=255)
      cTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGCGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAg                                                                                            >  1:2026261/1‑100 (MQ=255)
      cTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAg                                                                                            <  1:208224/100‑1 (MQ=255)
      cTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACCGCAGTGAACac                                                                                            <  2:1623174/100‑2 (MQ=255)
       tACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGc                                                                                           >  1:2410420/1‑100 (MQ=255)
        aCCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCt                                                                                          >  1:1194938/1‑100 (MQ=255)
        aCCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCt                                                                                          >  2:1905721/1‑100 (MQ=255)
         ccGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTg                                                                                         <  2:1064051/100‑1 (MQ=255)
         ccGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACCGCAGTGAACacagc                                                                                         <  1:699914/100‑5 (MQ=255)
         ccGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACCGCAGTGAACacagc                                                                                         <  1:2282425/100‑5 (MQ=255)
         ccGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACCGCAGTGAACacagc                                                                                         <  1:1429805/100‑5 (MQ=255)
         ccGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACCGCAGTGAACacagc                                                                                         <  2:1783510/100‑5 (MQ=255)
          cGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCTTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACCGCAGTGAACacag                                                                                          <  2:1544047/98‑4 (MQ=255)
          cGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTCCGTGGCCAGGCCGTCCATCGCTGTGTTCACTGCGGTGAACAGCTgg                                                                                        >  1:243325/1‑100 (MQ=255)
           gCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGt                                                                                       >  2:2452932/1‑100 (MQ=255)
           gCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGt                                                                                       >  2:1265180/1‑100 (MQ=255)
           gCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGt                                                                                       >  2:1105895/1‑100 (MQ=255)
            cTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGtt                                                                                      <  2:2256719/100‑1 (MQ=255)
             tGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTg                                                                                     <  2:2145407/100‑1 (MQ=255)
              gCAGGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGc                                                                                    <  1:2059545/100‑1 (MQ=255)
                 aGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGaa                                                                                 <  2:668416/100‑1 (MQ=255)
                  gTGCCAGGAGCATCAGCTTACCGTACGCCGCCAGAAGCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGa                                                                                  <  1:2188551/98‑1 (MQ=255)
                      cAGGAGCATCAGCTTACCGTACTCCGCCATACTCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAAc                                                                            <  1:1746191/100‑1 (MQ=255)
                      cAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGCGGCCGGCGATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAAc                                                                            >  1:2559715/1‑100 (MQ=255)
                        ggAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCa                                                                          <  1:371913/100‑1 (MQ=255)
                          aGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATc                                                                        >  2:2048584/1‑100 (MQ=255)
                            cATGAGCTTACAGTACGCCGCCATAATCGCGTAGTGCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTg                                                                      <  2:2201289/100‑1 (MQ=255)
                            cATCAGCTTACCGTACGCCGCCAGAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAAACAt                                                                         >  1:937906/1‑97 (MQ=255)
                               ttccgatctgTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAAc                                                                   <  2:874930/91‑1 (MQ=255)
                               cAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAAc                                                                   <  2:1548977/100‑1 (MQ=255)
                               cAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAAc                                                                   <  2:2000175/100‑1 (MQ=255)
                               cAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAAc                                                                   <  2:2577654/100‑1 (MQ=255)
                               cAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGACTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAAc                                                                   >  1:1434186/1‑100 (MQ=255)
                                 gCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTa                                                                 >  1:13127/1‑100 (MQ=255)
                                     aCCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAg                                                             <  2:1847711/100‑1 (MQ=255)
                                     aCCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAg                                                             <  2:300520/100‑1 (MQ=255)
                                      ccGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAgg                                                            <  2:1434194/100‑1 (MQ=255)
                                        gTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAAcagatcggaa                                                          >  1:874927/1‑91 (MQ=255)
                                         tACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAAc                                                         <  2:1834971/100‑1 (MQ=255)
                                          aCGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACt                                                        <  2:1194942/100‑1 (MQ=255)
                                           cgccgcCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACtt                                                       >  1:2442970/1‑100 (MQ=255)
                                            gccgccATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACttt                                                      >  2:607575/1‑100 (MQ=255)
                                             ccgccATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTc                                                     >  2:1514241/1‑100 (MQ=255)
                                              cgccATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTcc                                                    <  1:607572/100‑1 (MQ=255)
                                                ccATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTg                                                  >  1:662181/1‑100 (MQ=255)
                                                   tAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATc                                               <  2:1626742/100‑1 (MQ=255)
                                                    aaTCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAAAGTTCCTGAtag                                              <  2:273442/100‑3 (MQ=255)
                                                     aTCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTg                                             >  2:963181/1‑100 (MQ=255)
                                                       cgcgTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGc                                           <  1:1148709/100‑1 (MQ=255)
                                                          gTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGa                                        <  2:2443349/100‑1 (MQ=255)
                                                            aGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGAt                                       <  2:2054829/99‑1 (MQ=255)
                                                             gTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTg                                     <  2:440390/100‑1 (MQ=255)
                                                              ttCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTg                                     >  2:953378/1‑99 (MQ=255)
                                                              ttCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGc                                    <  1:2394218/100‑1 (MQ=255)
                                                                cGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCAt                                  <  2:2164107/100‑1 (MQ=255)
                                                                cGTGCCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCAt                                  >  1:796160/1‑100 (MQ=255)
                                                                 gTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATa                                 >  1:2525867/1‑100 (MQ=255)
                                                                   ggCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATAcc                               <  2:1129337/100‑1 (MQ=255)
                                                                    gCGAGGCCGTCTATCGCTGTGTTCACTGCGGTAAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCa                              <  1:1819335/100‑1 (MQ=255)
                                                                     cGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCaa                             <  2:1082886/100‑1 (MQ=255)
                                                                     cGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCaa                             >  2:691565/1‑100 (MQ=255)
                                                                       aGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCaaaa                           >  2:2477813/1‑100 (MQ=255)
                                                                        ggCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAAc                          <  2:292417/100‑1 (MQ=255)
                                                                        ggCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAAc                          >  1:841241/1‑100 (MQ=255)
                                                                         gCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACa                         >  2:745439/1‑100 (MQ=255)
                                                                            gTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCt                      <  2:529952/100‑1 (MQ=255)
                                                                             tCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCtt                     >  1:358255/1‑100 (MQ=255)
                                                                             cgcaaccagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCtt                     >  1:1908056/11‑100 (MQ=38)
                                                                              cTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCttt                    >  1:2307640/1‑100 (MQ=255)
                                                                               tATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTc                   >  1:1055532/1‑100 (MQ=255)
                                                                               caaccagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTc                   >  2:16318/9‑100 (MQ=38)
                                                                               caaccagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGCCTGATTGCATACCAAAACAGCTTTc                   >  1:532055/9‑100 (MQ=38)
                                                                                aTCGCTGTGTTCACTGCGGTGAACAGCTGTTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCg                  <  1:1726307/100‑1 (MQ=255)
                                                                                 tCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGc                 <  2:414071/100‑1 (MQ=255)
                                                                                 accagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGc                 >  1:1664701/7‑100 (MQ=255)
                                                                                 accagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTCTCGc                 >  1:63996/7‑100 (MQ=255)
                                                                                  cGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCt                >  1:797324/1‑100 (MQ=255)
                                                                                  cGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCAGCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCg                  <  1:678641/98‑1 (MQ=255)
                                                                                   gCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGCTTGCATACCAAAACAGCTTTCGCTa               >  2:2039615/1‑100 (MQ=255)
                                                                                   gCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTa               >  1:1526803/1‑100 (MQ=255)
                                                                                   cagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTa               >  2:2431946/5‑100 (MQ=255)
                                                                                   cagctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTa               >  2:1995723/5‑100 (MQ=255)
                                                                                    cTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTTGCTGATTGCATACCAAAACAGCTTTCGCTa               <  1:1521552/99‑1 (MQ=255)
                                                                                    agctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGATTTCGCTAc              >  2:1701648/4‑100 (MQ=255)
                                                                                     tgtgTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACg             <  2:2359674/100‑1 (MQ=255)
                                                                                     tgtgTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACg             <  2:2056853/100‑1 (MQ=255)
                                                                                     gctgtTCACCGCAGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACg             >  2:2197315/3‑100 (MQ=255)
                                                                                        gtTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAACACAGCTTTCGCTACGTTg          >  1:869455/1‑100 (MQ=255)
                                                                                        gtTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg          >  1:869582/1‑100 (MQ=255)
                                                                                        gtTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg          >  1:2387899/1‑100 (MQ=255)
                                                                                         ttCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc         <  1:1964340/100‑1 (MQ=255)
                                                                                           cACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg       <  1:2361129/100‑1 (MQ=255)
                                                                                             cTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc     >  1:27939/1‑100 (MQ=255)
                                                                                             cTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc     <  1:1039998/100‑1 (MQ=255)
                                                                                             cTGCGGAGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc     >  1:2561457/1‑100 (MQ=255)
                                                                                                cGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg  <  2:1997944/100‑1 (MQ=255)
                                                                                                 |                                                                                                  
CTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCG  >  NC_000913/3090132‑3090327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: