| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 33.8% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 33.8% | 286.5 / 194.9 | 204 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (78/57); new base C (64/5); total (142/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.94e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-02 | |||||||||||
Only 100 of 206 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGT > NC_000913/3705886‑3706081 | gcttcgggATGGGGCTGCGCGCGGGGGCCCACCGCTCCCGGGTCGACGGATTGTTGACAACGTGCGTTTTGTTTATGCCGGTTGCGGCGTTAACGCCTTa < 1:2251500/94‑1 (MQ=12) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1508511/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:320805/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGCCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2158910/100‑2 (MQ=25) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 1:556861/1‑100 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 1:654166/100‑2 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:2282272/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 2:703729/1‑100 (MQ=255) gcTGCACTCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:1359750/1‑100 (MQ=255) cTGCACACAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa < 1:2177060/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:1130908/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:2378553/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:1777335/100‑1 (MQ=255) gCAGAGGCACCGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGTCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1697668/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 1:460027/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:2580507/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:1920824/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:552189/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:2123473/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa > 1:2265187/1‑100 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 1:2487073/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATAGTGCAAATTCAATa > 1:2526968/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 1:1446952/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:2384083/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 1:2062999/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:1693903/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 2:2327539/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc > 2:2451626/1‑100 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa > 2:2494180/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa > 1:700297/1‑99 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAg < 2:2485311/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTGGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATGGTGCAAATTCAATACATTGCAg > 2:2325510/1‑100 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGa > 1:2417159/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGaa > 2:1235673/1‑100 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAt‑‑t > 2:336142/1‑100 (MQ=255) aGATTGTTGACCAAGTGCGCCTCGTTTATGCCCACTGCGGCGTTAACGCCCTATCCGGCCAAC‑AAAATCGTGCAAATTAACAACATTGCAGAAC‑‑T‑‑‑TTC‑‑Gt < 1:1024901/100‑1 (MQ=17) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAATGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑Gt > 1:1438554/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑g < 2:209472/99‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑Gt > 1:1261948/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑Gt > 1:1831980/1‑100 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAgg > 1:809208/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGcc > 2:758725/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGcc > 2:2545212/1‑100 (MQ=255) ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCTGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGcc > 1:117391/5‑100 (MQ=18) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTg > 2:511919/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGa > 2:1838328/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGa > 1:2364354/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGAt > 1:757542/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa > 2:742774/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa > 2:161066/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1561342/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc > 1:672309/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg < 1:422691/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 2:537295/1‑100 (MQ=255) cttttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGAGT‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1474480/10‑100 (MQ=17) attttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc > 2:2021847/10‑100 (MQ=17) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGGAA‑‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCAt > 2:815023/8‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:2191555/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:13733/7‑100 (MQ=17) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg < 1:2021835/96‑1 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCGAT‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1290760/5‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGGAT‑‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1006923/4‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑ATA‑‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1032087/3‑99 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGGAG‑‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1654040/3‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCA‑ATTCAA‑‑‑CTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:410447/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:588614/2‑100 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:365478/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:118933/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGAGT‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1872026/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGGAA‑‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCag > 2:422792/1‑99 (MQ=18) ccggataaggcgTTCACGCCTTATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑AAT‑‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2028248/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2089857/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:955026/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGGAT‑‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:360834/9‑98 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:1371691/100‑1 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GAATC‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:1591717/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AAT‑‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 2:841306/7‑97 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AAT‑‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:733678/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1968722/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCATGAG‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1956352/7‑100 (MQ=17) ggataaggcgTTCACGCAGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGGAG‑‑A‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttta > 1:1213401/7‑98 (MQ=18) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCAAGAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgctc > 2:1935684/6‑95 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2399014/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:230715/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1090719/100‑1 (MQ=255) taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 2:306988/4‑100 (MQ=18) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:916956/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1015627/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:843115/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCACTtttgcc > 2:674919/1‑99 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:2523337/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 1:203325/1‑100 (MQ=255) ctttAACGCCTTATCCGGGCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2347513/98‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAGTTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATAtttccctttgc < 1:1359742/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1625384/100‑1 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2478723/1‑100 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2476843/1‑100 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGCAGAGT‑‑T‑‑‑TTC‑‑GTAGGGCTGATAAGCGGAGCGCATCAGGCATGtttgtctttgccct > 1:1570042/1‑98 (MQ=18) cgttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCTTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:2508572/97‑1 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:933861/1‑100 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGT > NC_000913/3705886‑3706081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |