Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,261,358 T→A 16.6% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,261,3580TA16.6% 290.7 / 38.6 112intergenic (+52/‑311)yjbM/dusAuncharacterized protein/tRNA‑dihydrouridine synthase A
Reads supporting (aligned to +/- strand):  ref base T (41/52);  new base A (10/9);  total (51/61)
Fisher's exact test for biased strand distribution p-value = 6.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 120 total aligned reads displayed.

CTTCTAAATTAATTTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAACCTGGATTGTT  >  NC_000913/4261260‑4261456
                                                                                                  |                                                                                                  
  tCTAAATTAATTTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAAtattta                                                                                                 >  2:1614606/1‑100 (MQ=255)
   cTAAATTAATTTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAAtatttat                                                                                                <  2:1629285/100‑1 (MQ=255)
     aaaTTTATTTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATAAATATTg                                                                                              <  2:1602920/100‑1 (MQ=255)
      aattaattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTgg                                                                                             <  1:288274/100‑1 (MQ=255)
      aattaattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTgg                                                                                             >  1:1536243/1‑100 (MQ=255)
       attaattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTggg                                                                                            <  2:780039/100‑1 (MQ=255)
        ttaattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTgg                                                                                             <  2:255344/98‑1 (MQ=255)
        ttaattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGt                                                                                           <  1:1321004/100‑1 (MQ=255)
          aattTATGATTTGTTCGGGGTTAAATCGGAGATATATTATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGGGtcc                                                                                         <  1:431001/100‑3 (MQ=38)
          aattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTc                                                                                         <  2:2107499/100‑1 (MQ=255)
          aattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTc                                                                                         <  2:1978194/100‑1 (MQ=255)
          aattTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTc                                                                                         <  1:115126/100‑1 (MQ=255)
           attTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCt                                                                                        >  1:242310/1‑100 (MQ=255)
           attTATGATGTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGGGTCCt                                                                                        <  1:1423240/100‑1 (MQ=38)
            tttATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCtt                                                                                       >  2:766256/1‑100 (MQ=255)
            tttATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCtt                                                                                       >  1:310342/1‑100 (MQ=255)
              tATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGGGTCCtttt                                                                                     <  1:93706/100‑1 (MQ=38)
               aTGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCttttt                                                                                    <  2:625958/100‑1 (MQ=255)
                tGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGGGTCCttttat                                                                                   <  2:1064271/100‑3 (MQ=37)
                tGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGGGTCCttttat                                                                                   <  1:714841/100‑3 (MQ=37)
                   tttGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTtctc                                                                                <  2:516432/100‑1 (MQ=255)
                   tttGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTtctc                                                                                <  2:379852/100‑1 (MQ=255)
                     tGTTCGGGGTTAAGTCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTa                                                                              <  2:720480/100‑1 (MQ=255)
                      gTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATATTTATTGGGTTCTTTTTTCTCTAt                                                                             >  2:1503007/1‑100 (MQ=255)
                      gTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTACTTCGATAGTATGGAAGGCATTATATAACAGGACACAATATTTATTGGGTTCTTTTTTCTCTAt                                                                             >  1:1151928/1‑100 (MQ=255)
                       ttCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATc                                                                            <  1:136875/100‑1 (MQ=255)
                       ttCGGGGTTAAATCGGAAAAATAATATGTAAAATGCTTCGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGGGTCCttttatataatgc                                                                            <  1:2552477/100‑10 (MQ=18)
                        tCGGGGTTAAATCAGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCa                                                                           >  1:1598558/1‑100 (MQ=255)
                        tCGAGGTTAAATTGGAGAAATAATATGTGAAGTACTGAGATAGTATGGAAGGCATTATATAAAAGAACCCAATAAATATTGCGTCCttttatataatg                                                                             <  1:518721/98‑9 (MQ=16)
                         cGGGGTTAAATTGGAGAAATAATAGGTGAAAATCTTCGATAGTATGGAAGGATTTATATAAAAGGAATCAATGTTTATTGGGTTCTTTTTTCTCTAt                                                                             >  1:2325032/1‑97 (MQ=255)
                          ggggTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCaa                                                                          >  1:890798/1‑99 (MQ=255)
                          ggggTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAAt                                                                         >  2:2268637/1‑100 (MQ=255)
                             gTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACt                                                                      >  2:2501370/1‑100 (MQ=255)
                                aaaTCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTAtt                                                                   <  1:323526/100‑1 (MQ=255)
                                 aaTCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTa                                                                  <  2:1103758/100‑1 (MQ=255)
                                    cGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCa                                                               <  1:1583312/100‑1 (MQ=255)
                                    cGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCa                                                               <  2:1814890/100‑1 (MQ=255)
                                     ggAGAAATAATGTGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAg                                                              >  1:1987169/1‑100 (MQ=255)
                                      gagaAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAgg                                                             <  2:717751/100‑1 (MQ=255)
                                       agaAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAggg                                                            <  2:1881643/100‑1 (MQ=255)
                                       agaAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAggg                                                            <  1:109761/100‑1 (MQ=255)
                                       agaAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAggg                                                            <  1:2259343/100‑1 (MQ=255)
                                          aataatATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGgaga                                                         >  2:1458650/1‑100 (MQ=255)
                                           ataataTGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGat                                                        <  1:1012603/100‑1 (MQ=255)
                                           ataataTGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGat                                                        >  2:1756102/1‑100 (MQ=255)
                                            taataTGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGata                                                       <  1:2562641/100‑1 (MQ=255)
                                            taataTGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGata                                                       <  2:2326800/100‑1 (MQ=255)
                                            taataTGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGata                                                       <  1:1359414/100‑1 (MQ=255)
                                              atatGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGatata                                                     <  1:1341701/100‑1 (MQ=255)
                                                atGTGAAGTTTTTTTATAGTATGTGAGGCATTATATAAAAGGACCCTATATTTATTGGTTTCTTTTGTCTCTATCAATATTATTAGCAGGGAGatata                                                     <  1:1541138/98‑1 (MQ=255)
                                                atGTGAAGTTCTTCGCTAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATc                                                   <  2:2551474/100‑1 (MQ=255)
                                                   tgAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCAcc                                                >  1:2440932/1‑100 (MQ=255)
                                                   tgAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCAcc                                                <  2:788907/100‑1 (MQ=255)
                                                    gAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCa                                               >  1:1743855/1‑100 (MQ=255)
                                                      aGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCaga                                             <  1:1948998/100‑1 (MQ=255)
                                                       gTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCTAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCagag                                            <  1:258518/100‑1 (MQ=255)
                                                        ttcttcGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCagan                                            <  2:24102/99‑2 (MQ=255)
                                                          cttcGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGttt                                         >  1:1910770/1‑100 (MQ=255)
                                                            tcGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTaa                                       >  2:1073715/1‑100 (MQ=255)
                                                            tcGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTaa                                       <  1:603502/100‑1 (MQ=255)
                                                             cGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTAGGTTCTTTTTTTTTTTTTTATACTATTAGCAGGGAGATATATCACCAGAGTTTAAt                                      >  1:924714/1‑100 (MQ=255)
                                                              gATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAAtg                                     <  2:963732/100‑1 (MQ=255)
                                                              gATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCCTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAAtg                                     <  1:1314943/100‑1 (MQ=255)
                                                               attgTATGGAAGGCATTATATCAATGGACCTAATATTTAGTTGGTTCTTTTTTCTCTATCAATACTATTCGCAGGGAGGTTTATCGCAAGAGTTTAAt                                      <  1:378550/95‑1 (MQ=255)
                                                                tAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAAtgtg                                   <  2:652272/100‑1 (MQ=255)
                                                                tAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAAtgt                                    >  1:615181/1‑99 (MQ=255)
                                                                 aGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAAtgtgt                                  <  2:1044489/100‑1 (MQ=255)
                                                                    aTGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGAt                               >  1:1053363/1‑100 (MQ=255)
                                                                       gAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGAtttt                            >  2:1075100/1‑100 (MQ=255)
                                                                       gAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGAtttt                            <  1:1102892/100‑1 (MQ=255)
                                                                       gAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGAtttt                            <  1:1103124/100‑1 (MQ=255)
                                                                         aGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGAtttttt                          >  2:692739/1‑100 (MQ=255)
                                                                          gtcATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTttta                         <  2:1338186/98‑1 (MQ=255)
                                                                          ggCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTttta                         <  1:854137/100‑1 (MQ=255)
                                                                          ggCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTttta                         <  2:759303/100‑1 (MQ=255)
                                                                             tagagaaaaaaGAACCCAATAAATATTGGGTCCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTtttattt                      >  2:2552927/8‑100 (MQ=25)
                                                                               gagaaaaaaGAACCCAATAAATATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTttatttat                    >  2:132623/6‑100 (MQ=38)
                                                                               gagaaaaaaGAACCCAATAAATATTGGGTCCTTTTTTCTCTATCAATACTATTAGCCGGGGGATATATCACCAGAGTTTAATGTGTGATTTtttattta                     >  2:147221/6‑99 (MQ=25)
                                                                               gagaaaaaaGAACCCAATAAATATTGGGTCCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTttatttat                    >  2:2536996/6‑100 (MQ=25)
                                                                               gagaaaaaaGAACCCAATAAATATTGGGTCCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTttatttat                    >  2:54953/6‑100 (MQ=25)
                                                                                atataAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtc                   >  2:2396003/1‑100 (MQ=255)
                                                                                atataAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtc                   <  1:1614597/100‑1 (MQ=255)
                                                                                 tataAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcg                  >  1:229705/1‑100 (MQ=255)
                                                                                 tataAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcg                  >  1:1443622/1‑100 (MQ=255)
                                                                                  ataAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcgt                 >  1:1872620/1‑100 (MQ=255)
                                                                                   taAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATTTATCACCAGCGTTTAATGTGTGATTTTTTATTTAtcgtc                >  1:2025121/1‑100 (MQ=255)
                                                                                   taAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcgtc                >  1:579549/1‑100 (MQ=255)
                                                                                   taAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcgtc                >  1:565099/1‑100 (MQ=255)
                                                                                   taAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcgtc                >  1:420690/1‑100 (MQ=255)
                                                                                   taAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTAtcgtc                >  2:1981329/1‑100 (MQ=255)
                                                                                       aGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAAc            >  1:193221/1‑100 (MQ=255)
                                                                                        ggACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGCGCTATATTACTAGAGTTTACTGTGTGATTTTTTATTTATCTTCGAAc            >  1:2172709/1‑99 (MQ=255)
                                                                                        ggACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAAcc           <  2:580806/100‑1 (MQ=255)
                                                                                        ggACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAAcc           >  1:1401203/1‑100 (MQ=255)
                                                                                         gACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAACCt          <  1:2480614/100‑1 (MQ=255)
                                                                                           cccAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCATCGAAcc           >  1:1825466/1‑97 (MQ=255)
                                                                                             cAATAAATATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGTGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGTACCTGGa       >  1:374715/1‑99 (MQ=255)
                                                                                              aaTATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAACCTGGAtt     <  2:1722052/100‑1 (MQ=255)
                                                                                               atatTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAACCTGGATTg    <  2:229707/100‑1 (MQ=255)
                                                                                                 atttattGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAACCTGGATTGtt  <  2:36802/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
CTTCTAAATTAATTTATGATTTGTTCGGGGTTAAATCGGAGAAATAATATGTGAAGTTCTTCGATAGTATGGAAGGCATTATATAAAAGGACCCAATATTTATTGGGTTCTTTTTTCTCTATCAATACTATTAGCAGGGAGATATATCACCAGAGTTTAATGTGTGATTTTTTATTTATCGTCGAACCTGGATTGTT  >  NC_000913/4261260‑4261456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: