Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 87,881 A→G 15.7% intergenic (+33/‑147) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091387,8810AG15.7% 252.3 / 39.1 115intergenic (+33/‑147)ilvH/craacetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
Reads supporting (aligned to +/- strand):  ref base A (47/49);  new base G (6/12);  total (54/61)
Fisher's exact test for biased strand distribution p-value = 3.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.34e-01

Only 100 of 118 total aligned reads displayed.

GAAAATTGTGGAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCA  >  NC_000913/87782‑87980
                                                                                                   |                                                                                                   
gAAAATTGTGGAGGTTGCTCGCTCTGGTTTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACa                                                                                                     <  1:2246680/100‑1 (MQ=255)
gAAAATTGTGGAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACa                                                                                                     <  2:841631/100‑1 (MQ=255)
  aaaTTGTGGAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATg                                                                                                   >  2:1087181/1‑100 (MQ=255)
    aTTGTGGAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTc                                                                                                 >  1:2293346/1‑100 (MQ=255)
      tgtgGAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCAc                                                                                               >  2:1899249/1‑100 (MQ=255)
         ggAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGtt                                                                                            >  1:2092975/1‑100 (MQ=255)
         ggAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGtt                                                                                            >  1:2546182/1‑100 (MQ=255)
         ggAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGtt                                                                                            >  2:1968848/1‑100 (MQ=255)
         ggAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGtt                                                                                            <  2:2577900/100‑1 (MQ=255)
          gAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTg                                                                                           <  2:113078/100‑1 (MQ=255)
           aGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTgg                                                                                          <  2:2318060/100‑1 (MQ=255)
            ggTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTTAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTggn                                                                                         <  1:1436137/100‑2 (MQ=255)
             gTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGc                                                                                        <  2:487396/100‑1 (MQ=255)
             gTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGc                                                                                        <  1:943992/100‑1 (MQ=255)
             gTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGc                                                                                        >  1:1797137/1‑100 (MQ=255)
             gTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGc                                                                                        <  1:1896377/100‑1 (MQ=255)
              ttGCTAACTCTGGTGTGGTCGGACTTTCGCGAGGCGCTTAATTAATGCGTTGAGAATGATCTGAATGCGCAATTTACAGCCCAACGTGACATGTTGGGc                                                                                        <  1:1816312/99‑1 (MQ=255)
               tGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtg                                                                                      <  2:1590699/100‑2 (MQ=255)
               tGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCtt                                                                                      >  1:156205/1‑100 (MQ=255)
                gctcgctgTGTGGTGGTCGGACTTTCGCGGGGCGATAAAATAATGCGTCGAGAATGATGTCAATGCGTAATTTACAGCCCAAGGTTCCATGTTGGGCtgt                                                                                     <  1:2440495/100‑3 (MQ=255)
                gctcgctcTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgt                                                                                     <  2:1950813/100‑3 (MQ=255)
                gctcgctcTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgt                                                                                     <  1:2440542/100‑3 (MQ=255)
                gctcgctcTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCttt                                                                                     >  2:2189774/1‑100 (MQ=255)
                 ctcgctcTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgta                                                                                    <  1:1940505/100‑4 (MQ=38)
                 cgatctctGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgta                                                                                    <  2:2024833/96‑4 (MQ=38)
                  tcgctcTGGTGTGGTCGGACTTTCCCGCGTCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgt                                                                                     <  1:2049438/98‑3 (MQ=38)
                    gctcTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgtaaat                                                                                 <  2:312640/100‑7 (MQ=38)
                    gctcTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGGTGGGAATGATCTCAATGCGCAATTTACAGCCCAACATATCACGTTGGCCttttttt                                                                                 >  1:433183/1‑100 (MQ=255)
                     ctctGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTg                                                                                <  2:1386269/100‑1 (MQ=255)
                      tctGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGc                                                                               <  2:2084258/100‑1 (MQ=255)
                       ctGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACGTGACATGTTGGGCtgtaagatcg                                                                              >  1:2024821/1‑91 (MQ=38)
                       ctGGTGTGGTCGGACTTTCGCACGGCGATAAAATAATGCGTTGAAAATGATATCAATGCGCACTTTACAGCCCAACCTGTCACGTTTGGCTATTCTTg                                                                                >  1:237046/1‑98 (MQ=255)
                              ggTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAg                                                                       >  2:1793690/1‑100 (MQ=255)
                              ggTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAg                                                                       >  1:260027/1‑100 (MQ=255)
                               gTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGt                                                                      >  2:364891/1‑100 (MQ=255)
                                tCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTg                                                                     <  1:2210971/100‑1 (MQ=255)
                                tCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTg                                                                     <  1:1227487/100‑1 (MQ=255)
                                        tCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTg                                                             <  2:1391162/100‑1 (MQ=255)
                                            gcggcgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAAt                                                         <  2:2155205/100‑1 (MQ=255)
                                            gcggcgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAAt                                                         >  2:874122/1‑100 (MQ=255)
                                            gcggcgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAAt                                                         <  2:2541631/100‑1 (MQ=255)
                                            gcggcgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAAt                                                         <  2:2542038/100‑1 (MQ=255)
                                            gcggcgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAAt                                                         <  1:1140029/100‑1 (MQ=255)
                                                cgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATaaaa                                                     >  2:1884030/1‑100 (MQ=255)
                                                cgATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATaaaa                                                     <  1:2503533/100‑1 (MQ=255)
                                                  aTAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTCTTTGCGAAATCAGTGGGAACCTGGAATAAAAGc                                                   <  1:1553071/100‑1 (MQ=255)
                                                   tAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCa                                                  >  2:818951/1‑100 (MQ=255)
                                                   tAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCa                                                  <  1:240512/100‑1 (MQ=255)
                                                   tAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCa                                                  <  2:2476413/100‑1 (MQ=255)
                                                    aaaaTAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAg                                                 <  1:721192/100‑1 (MQ=255)
                                                    aaaaTAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAg                                                 >  2:2054626/1‑100 (MQ=255)
                                                     caataatGCGTTGAGAATGCACTCAATGCGCAATTTACAGCCCAACATGTCACGCTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGctg                                                 >  1:1963185/2‑97 (MQ=255)
                                                      aataatGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGtt                                               >  2:1834565/1‑100 (MQ=255)
                                                           tGCTTTTAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCg                                           <  1:891416/99‑1 (MQ=255)
                                                           tGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGcc                                            >  2:1072850/1‑98 (MQ=255)
                                                             cGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGTTAAATCATTTGGAACCTGGAATAAAAGCAGTTGCCGCa                                         >  1:1426628/1‑99 (MQ=255)
                                                             cGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAg                                        >  1:384063/1‑100 (MQ=255)
                                                                tGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTa                                     <  2:342213/100‑1 (MQ=255)
                                                                tGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTa                                     >  2:801429/1‑100 (MQ=255)
                                                                 gagaATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTaa                                    <  1:1466787/100‑1 (MQ=255)
                                                                  agaATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAAt                                   >  1:1182110/1‑100 (MQ=255)
                                                                  agaATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGGTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAAt                                   <  1:119173/100‑1 (MQ=255)
                                                                   gaATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAAtt                                  >  2:1717183/1‑100 (MQ=255)
                                                                   gaATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAAtt                                  >  2:1504990/1‑100 (MQ=255)
                                                                    aaTGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAAttt                                 >  2:1941752/1‑100 (MQ=255)
                                                                    aaTGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAAttt                                 <  2:2561186/100‑1 (MQ=255)
                                                                       gATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCt                              <  2:114919/100‑1 (MQ=255)
                                                                         tctcAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTgc                            <  1:2442881/100‑1 (MQ=255)
                                                                           tcAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTgcgc                          >  2:1958400/1‑100 (MQ=255)
                                                                           tcAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTgcgc                          >  2:2115810/1‑100 (MQ=255)
                                                                            cAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCt                         <  2:211423/100‑1 (MQ=255)
                                                                             aaTGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTGTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCtt                        <  1:204735/100‑1 (MQ=255)
                                                                              aTGCGAAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTa                       <  1:2284340/100‑1 (MQ=255)
                                                                                 tctcaaaaaaaGCCCAACGTGACATGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGAt                    <  1:2273652/90‑1 (MQ=37)
                                                                                 cgcAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGAAATAAAAACAGTTGCCGCAGTTAATTTTCTGCGCTTAGAt                    >  1:9158/1‑100 (MQ=255)
                                                                                  gcAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATg                   >  1:1597020/1‑100 (MQ=255)
                                                                                  gcAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATg                   >  2:2484375/1‑100 (MQ=255)
                                                                                  gcAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATg                   <  1:796367/100‑1 (MQ=255)
                                                                                  gcAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATg                   <  2:1842978/100‑1 (MQ=255)
                                                                                    caaaaaaaGCCCAACGTGACATGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGAtaga                 >  2:2273667/8‑97 (MQ=37)
                                                                                    caaaaaaaGCCCAACGTGACATGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGtt                 >  2:27877/8‑100 (MQ=38)
                                                                                    caaaaaaaGCCCAACGTGACATGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTACTGCGCTTAGATGtt                 >  2:2557046/8‑100 (MQ=37)
                                                                                      tttACAACCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTaa               >  2:1073170/1‑100 (MQ=255)
                                                                                       ttACAGCCCAGCATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTaa               <  1:2114913/99‑1 (MQ=255)
                                                                                       ttACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAAt              >  1:2342849/1‑100 (MQ=255)
                                                                                        atctgCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATg             <  2:789287/96‑1 (MQ=255)
                                                                                           aGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAAt          <  1:1217743/100‑1 (MQ=255)
                                                                                            ncccAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGagat         >  1:789284/2‑97 (MQ=255)
                                                                                            gtccAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAAtt         >  2:523557/3‑100 (MQ=255)
                                                                                            gCCCAACGTGACATGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAAtt         >  2:1586656/1‑100 (MQ=255)
                                                                                            gCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAAtt         >  2:440033/1‑100 (MQ=255)
                                                                                            gCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAAtt         >  2:2411158/1‑100 (MQ=255)
                                                                                            gCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAAtt         <  1:706347/100‑1 (MQ=255)
                                                                                              ccAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTa       <  1:2223062/100‑1 (MQ=255)
                                                                                              ccAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTa       >  1:776408/1‑100 (MQ=255)
                                                                                                aaCATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAAc     <  1:830889/100‑1 (MQ=255)
                                                                                                 aCATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTaa      <  2:1655446/98‑1 (MQ=255)
                                                                                                 aCATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAAcc    <  2:55982/100‑1 (MQ=255)
                                                                                                 aCATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAAcc    <  1:1618220/100‑1 (MQ=255)
                                                                                                   aTGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCa  <  2:1713062/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GAAAATTGTGGAGGTTGCTCGCTCTGGTGTGGTCGGACTTTCGCGCGGCGATAAAATAATGCGTTGAGAATGATCTCAATGCGCAATTTACAGCCCAACATGTCACGTTGGGCTTTTTTTGCGAAATCAGTGGGAACCTGGAATAAAAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCA  >  NC_000913/87782‑87980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: