Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 699,556 C→T 19.4% intergenic (‑379/+18) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913699,5560CT19.4% 220.4 / 44.8 103intergenic (‑379/+18)asnB/umpHasparagine synthetase B/UMP phosphatase
Reads supporting (aligned to +/- strand):  ref base C (37/46);  new base T (9/11);  total (46/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.68e-01

Only 100 of 106 total aligned reads displayed.

ACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAA  >  NC_000913/699457‑699655
                                                                                                   |                                                                                                   
aCAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTcc                                                                                                     >  2:2186099/1‑100 (MQ=255)
  aacaGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTATCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGc                                                                                                   <  1:850804/97‑1 (MQ=255)
   aaaGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCa                                                                                                  <  2:1692431/100‑1 (MQ=255)
     aGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGa                                                                                                <  1:1948557/100‑1 (MQ=255)
         tGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTg                                                                                            >  1:1259798/1‑100 (MQ=255)
         tGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTg                                                                                            >  1:425123/1‑100 (MQ=255)
           aaaaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGt                                                                                          <  2:761309/100‑1 (MQ=255)
            aaaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGtt                                                                                         <  2:1042667/100‑1 (MQ=255)
             aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTg                                                                                        <  2:112460/100‑1 (MQ=255)
             aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTg                                                                                        <  2:371841/100‑1 (MQ=255)
             aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTg                                                                                        <  2:279253/100‑1 (MQ=255)
             aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTg                                                                                        <  2:2487174/100‑1 (MQ=255)
              aTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTgg                                                                                       <  2:1836730/100‑2 (MQ=255)
              aTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTgg                                                                                       <  2:1983158/100‑2 (MQ=255)
               ttCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTggc                                                                                      <  2:1619716/100‑3 (MQ=255)
                 cAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTAt                                                                                    >  1:665750/1‑100 (MQ=255)
                 cAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTAt                                                                                    <  2:1246075/100‑1 (MQ=255)
                  aaTATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTAtt                                                                                   >  2:2419924/1‑100 (MQ=255)
                    tatatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCa                                                                                 <  2:53094/100‑1 (MQ=255)
                     atagTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCa                                                                                 <  1:454876/99‑1 (MQ=255)
                      tatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTggctctgatg                                                                               <  2:1147668/100‑10 (MQ=25)
                         tGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATaa                                                                            <  1:2357655/100‑1 (MQ=255)
                         tGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATa                                                                             >  1:1065684/1‑99 (MQ=255)
                             ggAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTGTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGGGGTTGCTATTCAGATAACGTc                                                                        >  1:763162/1‑100 (MQ=255)
                              gAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCg                                                                       <  1:2186084/100‑1 (MQ=255)
                              gAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCg                                                                       <  1:132405/100‑1 (MQ=255)
                                gCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGAt                                                                     >  2:1819480/1‑100 (MQ=255)
                                  tGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGAttt                                                                   >  1:181719/1‑100 (MQ=255)
                                   gCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTc                                                                  <  2:2446366/100‑1 (MQ=255)
                                     gTAGGCCTGATGAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAg                                                                <  2:1134184/100‑1 (MQ=255)
                                     gTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAg                                                                <  2:1013871/100‑1 (MQ=255)
                                     gTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAg                                                                <  1:2568622/100‑1 (MQ=255)
                                     gTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAg                                                                <  1:639269/100‑1 (MQ=255)
                                       aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCg                                                              <  2:2044587/100‑1 (MQ=255)
                                        ggCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGa                                                             >  1:154480/1‑100 (MQ=255)
                                        ggCCTGATAAGCGTAGCGCATCAGGCAGTTGGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCg                                                              <  1:1531249/99‑1 (MQ=255)
                                         gCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGAc                                                            >  2:2319586/1‑100 (MQ=255)
                                          ccTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACt                                                           <  2:1558323/100‑1 (MQ=255)
                                            tGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGa                                                         <  1:927323/100‑1 (MQ=255)
                                             gATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTTCTATTCAGATAACGTCGATTTCAGCGACTGAc                                                        <  2:2463305/100‑1 (MQ=255)
                                             gATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGAc                                                        >  2:37319/1‑100 (MQ=255)
                                               tAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACgg                                                      <  1:1105219/100‑1 (MQ=255)
                                               tAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACgg                                                      >  1:1115199/1‑100 (MQ=255)
                                                tctcGTAGCGCATCAGGCAGTTTGTCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACggg                                                     <  2:477815/97‑1 (MQ=255)
                                                aaGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCTGCGACTGACggg                                                     <  2:2082889/100‑1 (MQ=255)
                                                aaGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACggg                                                     >  2:2056510/1‑100 (MQ=255)
                                                 aGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGt                                                    >  1:869819/1‑100 (MQ=255)
                                                  gCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTa                                                   <  1:2319572/100‑1 (MQ=255)
                                                  gCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGACCGCAGACGTGGTTGATATGCAGATAAAGTCGCTTTCAGCGACCAACGGGTa                                                   >  1:2367971/1‑100 (MQ=37)
                                                   cGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTaa                                                  >  2:1022376/1‑100 (MQ=255)
                                                    gTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTaaa                                                 >  1:164735/1‑100 (MQ=255)
                                                      aGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATc                                               >  2:781450/1‑100 (MQ=255)
                                                        cgcATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCa                                             >  2:2422294/1‑100 (MQ=255)
                                                        cgcATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGCCGATTTCAGCGACTGACGGGTAAATCCa                                             >  1:1589910/1‑100 (MQ=255)
                                                         gcATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAg                                            >  2:451544/1‑100 (MQ=255)
                                                            tCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTg                                         <  2:1968029/100‑1 (MQ=255)
                                                              aGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTggg                                       <  2:1726214/100‑1 (MQ=255)
                                                               ggCAGTTTGGCGTTTGTCATCAGAGCCATCCACGTCCGCATACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTgggg                                      <  1:530586/100‑1 (MQ=255)
                                                               ggCAGTTTGGCGTTTGTCATCAGAGCCAACCAGGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTgggg                                      >  2:2459380/1‑100 (MQ=255)
                                                               ggCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTgggg                                      >  1:786571/1‑100 (MQ=255)
                                                               ggCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTgggg                                      >  1:595392/1‑100 (MQ=255)
                                                                   gTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGa                                  >  2:216130/1‑100 (MQ=255)
                                                                    tttGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGaa                                 >  2:707923/1‑100 (MQ=255)
                                                                        gCGTTTGTCATCAGAGCCAACCACGTTCGCAGACGTGGGTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGc                             <  1:2589021/100‑1 (MQ=255)
                                                                         cGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCa                            <  1:216128/100‑1 (MQ=255)
                                                                         cGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTCCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCa                            <  1:1819470/100‑1 (MQ=255)
                                                                               tcatcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGt                      >  2:1624610/1‑100 (MQ=255)
                                                                                catcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTc                     >  2:372041/1‑100 (MQ=255)
                                                                                catcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTc                     <  2:1683857/100‑1 (MQ=255)
                                                                                cagcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTc                     <  1:1148085/97‑1 (MQ=255)
                                                                                 atcaGAGCCAACCACGTCCGCAGACGTGGTTGGTATTCAGATAAGGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTc                     <  1:2070159/99‑1 (MQ=255)
                                                                                 atcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCg                    <  1:1318682/100‑1 (MQ=255)
                                                                                 atcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCg                    <  1:1940363/100‑1 (MQ=255)
                                                                                  tgaatagcAACCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGa                   >  2:1058261/8‑100 (MQ=38)
                                                                                  tcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGa                   <  1:2111537/100‑1 (MQ=255)
                                                                                  tcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGa                   <  2:1927877/100‑1 (MQ=255)
                                                                                  ncaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGa                   >  1:2120585/2‑100 (MQ=255)
                                                                                   caGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGat                  <  2:1231787/100‑1 (MQ=255)
                                                                                    agagCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGata                 <  2:2160737/100‑1 (MQ=255)
                                                                                     gagCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGatat                <  2:665753/100‑1 (MQ=255)
                                                                                     atagcAACCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGatat                >  1:1270543/5‑100 (MQ=39)
                                                                                      agCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtc               >  2:1334769/1‑100 (MQ=255)
                                                                                       gCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATATCGTCGATTTCAGCGACTGACGGGTAAAACCAGCTCGGGCGGAAAGGCATACTGTCGATAtct              >  1:1365605/1‑99 (MQ=255)
                                                                                       gCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcg              >  2:393751/1‑100 (MQ=255)
                                                                                       gCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcg              >  2:1198699/1‑100 (MQ=255)
                                                                                        gcAACCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCCGGGGCGGAAAGGCCTACTGTCGATAtcgt             >  1:785616/2‑100 (MQ=255)
                                                                                        gcAACCACGTCTACGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgt             >  2:1701001/2‑100 (MQ=255)
                                                                                        ccAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgt             <  1:463930/100‑1 (MQ=255)
                                                                                         cAACCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgtc            >  2:2401548/1‑100 (MQ=255)
                                                                                         cAACCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgtc            >  2:2455830/1‑100 (MQ=255)
                                                                                         cAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgtc            >  1:1876624/1‑100 (MQ=255)
                                                                                          aaCCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgtcg           >  2:2003802/1‑100 (MQ=255)
                                                                                          aaCCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATAtcgtcg           <  2:2164837/100‑1 (MQ=255)
                                                                                            ccACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAg         <  1:1345865/100‑1 (MQ=255)
                                                                                               cGTCCGCAGACGTGTTTGCTATTCATATAACGTCGATTTCAGCTACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGcg       <  1:2403035/99‑1 (MQ=255)
                                                                                               cGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGcga      >  2:1806981/1‑100 (MQ=255)
                                                                                                gTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGcgac     <  1:968958/100‑1 (MQ=255)
                                                                                                 tCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGcgacg    >  1:906547/1‑100 (MQ=255)
                                                                                                   cGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGaa  <  1:271864/100‑1 (MQ=255)
                                                                                                   cGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGaa  >  2:629829/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAA  >  NC_000913/699457‑699655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: