Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,806,042	(C)6→5	coding (42/759 nt)	ydiY ←	acid‑inducible putative outer membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,806,037	0	C	.	100.0%	402.2 / NA	90	coding (47/759 nt)	ydiY	acid‑inducible putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (46/44);  total (46/44)

GCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAA  >  NC_000913/1805938‑1806132                                                                                                    |                                                                                                gCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGc                                                                                                 >  1:2211299/1‑100 (MQ=255) gCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGc                                                                                                 <  2:27982/100‑1 (MQ=255)  cGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGcc                                                                                                >  2:1485545/1‑100 (MQ=255)     tCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGccccc                                                                                             <  1:110823/100‑1 (MQ=255)     tCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGccccc                                                                                             <  1:2651653/100‑1 (MQ=255)        gATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGcccccgcc                                                                                          >  1:1172216/1‑97 (MQ=255)         aTTACCTTCGAAAGGTTTTTTAGCGCGGGCAGGATCATCCATGACAGTAAAAACGTCATCATCGGCAGCTGCATTCAGTGACGCAAACATGcccccgcc                                                                                          <  1:657119/99‑4 (MQ=255)           tACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAAc                                                                                      <  2:2474433/100‑1 (MQ=255)           tACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAAc                                                                                      <  2:1976202/100‑1 (MQ=255)           tACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAAc                                                                                      >  1:560913/1‑100 (MQ=255)            aCCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACa                                                                                     <  1:2203151/100‑1 (MQ=255)              cTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATa                                                                                   >  2:2160715/1‑100 (MQ=255)              cTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATa                                                                                   >  1:1566934/1‑100 (MQ=255)               ttCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATaa                                                                                  >  2:132208/1‑100 (MQ=255)                tCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAAc                                                                                 <  2:494200/100‑1 (MQ=255)                tCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAAc                                                                                 <  2:1030942/100‑1 (MQ=255)                tCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAAc                                                                                 >  2:666706/1‑100 (MQ=255)                tCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAAc                                                                                 >  1:747871/1‑100 (MQ=255)                  gAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGa                                                                               <  1:1692442/100‑1 (MQ=255)                     aGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATgg                                                                            >  1:2661289/1‑100 (MQ=255)                     aGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATgg                                                                            <  2:2671682/100‑1 (MQ=255)                      ggTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGc                                                                           >  1:385158/1‑100 (MQ=255)                      ggTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGc                                                                           >  1:672770/1‑100 (MQ=255)                      ggTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGc                                                                           <  2:2483433/100‑1 (MQ=255)                       gTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCa                                                                          >  2:761308/1‑100 (MQ=255)                       gTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCa                                                                          <  1:2249611/100‑1 (MQ=255)                        ttttttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAg                                                                         <  1:1208186/100‑1 (MQ=255)                         tttttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAgg                                                                        <  2:1972910/100‑1 (MQ=255)                         tttttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAgg                                                                        <  2:1116757/100‑1 (MQ=255)                          ttttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGa                                                                       >  1:35291/1‑100 (MQ=255)                          ttttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGa                                                                       >  1:1263166/1‑100 (MQ=255)                          ttttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGa                                                                       >  2:866407/1‑100 (MQ=255)                           tttAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGaa                                                                      <  2:816931/100‑1 (MQ=255)                              aGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTg                                                                   >  2:2089482/1‑100 (MQ=255)                               gcgcTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGt                                                                  >  1:1839535/1‑100 (MQ=255)                                  cTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCtt                                                               >  2:234902/1‑100 (MQ=255)                                   tGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTc                                                              <  2:1402858/100‑1 (MQ=255)                                   tGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTc                                                              <  1:1176170/100‑1 (MQ=255)                                    ggCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCa                                                             <  1:306428/100‑1 (MQ=255)                                    ggCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCa                                                             <  1:2591667/100‑1 (MQ=255)                                     gcagcaTCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCa                                                             <  2:1683342/99‑1 (MQ=255)                                      cAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCaaa                                                           <  1:632509/100‑1 (MQ=255)                                        ggATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAg                                                         >  1:388424/1‑100 (MQ=255)                                         gATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGc                                                        >  1:1592153/1‑100 (MQ=255)                                         gATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGc                                                        >  2:642391/1‑100 (MQ=255)                                          atcatcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCt                                                       <  1:666708/100‑1 (MQ=255)                                          atcatcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCt                                                       >  1:277551/1‑100 (MQ=255)                                           tcatcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCtt                                                      <  2:1450408/100‑1 (MQ=255)                                             atcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCa                                                    >  1:568017/1‑100 (MQ=255)                                             atcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCa                                                    >  1:1797086/1‑100 (MQ=255)                                             atcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCa                                                    >  1:2460090/1‑100 (MQ=255)                                              tcCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCAt                                                   <  1:435672/100‑1 (MQ=255)                                               ccATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCAtt                                                  >  1:2372257/1‑100 (MQ=255)                                               ccATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCAtt                                                  <  1:991268/100‑1 (MQ=255)                                                  tGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTAt                                               >  1:1965775/1‑100 (MQ=255)                                                   gACAGTAAAAACGGAATCATCGGCAGCTGCATTCCGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTTATTTATc                                              <  2:1520795/100‑1 (MQ=255)                                                     cAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCaa                                            >  1:1860144/1‑100 (MQ=255)                                                      aGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAag                                           <  1:286383/100‑1 (MQ=255)                                                       gTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAaga                                          <  2:420021/100‑1 (MQ=255)                                                       gTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAaga                                          >  1:2376544/1‑100 (MQ=255)                                                       gTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAaga                                          >  2:1082665/1‑100 (MQ=255)                                                           aaaCGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTcc                                      >  1:793856/1‑100 (MQ=255)                                                            aaCGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCg                                     <  2:2583152/100‑1 (MQ=255)                                                               ggAATCATCGGCAGCTTCATTCAGTGACACAAACTTG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTa                                   <  2:510361/99‑1 (MQ=255)                                                               ggAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGTACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTac                                  >  1:1704037/1‑100 (MQ=255)                                                               ggAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTac                                  <  2:20311/100‑1 (MQ=255)                                                                gAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTaca                                 <  2:568015/100‑1 (MQ=255)                                                                gAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTaca                                 <  1:528219/100‑1 (MQ=255)                                                                  atcatcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTacaac                               <  1:2338148/100‑1 (MQ=255)                                                                  atcatcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGGCTTCAAAAGCTTCATTTATCAAGAGTCCGTacaac                               <  2:2148860/100‑1 (MQ=255)                                                                   tcatcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTacaaca                              <  2:1445207/100‑1 (MQ=255)                                                                    catcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTAcaacaa                             >  1:989988/1‑100 (MQ=255)                                                                    catcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTAcaacaa                             >  2:2276343/1‑100 (MQ=255)                                                                    catcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTAcaacaa                             >  2:2487276/1‑100 (MQ=255)                                                                     atcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACaaa                            <  2:805206/100‑1 (MQ=255)                                                                      tcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACaaaa                           <  2:1797073/100‑1 (MQ=255)                                                                      tcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACaaaa                           <  2:2661270/100‑1 (MQ=255)                                                                      tcGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACaaaa                           <  1:1171638/100‑1 (MQ=255)                                                                       cGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACaaaaa                          <  1:2364108/100‑1 (MQ=255)                                                                        ggCAGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACaaaaaa                         >  1:1533381/1‑100 (MQ=255)                                                                           aGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAaga                      >  2:1066920/1‑100 (MQ=255)                                                                           aGCTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATAGCAGAAACTGTCTTCAAAAGCTTCATTTATCAAGATTCCGTACAACAAAAAAaga                      <  2:1840962/100‑1 (MQ=255)                                                                             cTGCATTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAgaga                    <  1:1782355/100‑1 (MQ=255)                                                                                 aTTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCAt                >  2:430508/1‑100 (MQ=255)                                                                                 aTTCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCAt                >  1:2471137/1‑100 (MQ=255)                                                                                   tCAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATcg              <  1:1857690/100‑1 (MQ=255)                                                                                    cAGTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATcgc             >  2:1992475/1‑100 (MQ=255)                                                                                      gTGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCgg           <  2:160056/100‑1 (MQ=255)                                                                                       tGACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGt          >  2:1121843/1‑100 (MQ=255)                                                                                        gACGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTc         >  2:1323891/1‑100 (MQ=255)                                                                                         aCGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTcc        >  1:1086543/1‑100 (MQ=255)                                                                                          cGCAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTccc       >  2:501046/1‑100 (MQ=255)                                                                                            cAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCgg     >  1:1673090/1‑100 (MQ=255)                                                                                            cAAACATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCgg     >  1:1382317/1‑100 (MQ=255)                                                                                             aaaCATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGa    <  2:35291/100‑1 (MQ=255)                                                                                             aaaCATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGa    >  1:2814684/1‑100 (MQ=255)                                                                                               aCATG‑CCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGaaa  >  1:136851/1‑100 (MQ=255)                                                                                                    |                                                                                                GCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAA  >  NC_000913/1805938‑1806132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑