New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4168568	121 (1.050)	45 (0.420)	17/184	9.9	28.6%	intergenic (+121/‑73)	gltT/rrlB	tRNA‑Glu/23S ribosomal RNA of rrnB operon
	?	NC_000913	= 4209974	NA (NA)					intergenic (+125/‑69)	gltV/rrlE	tRNA‑Glu/23S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

GTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4168463‑4168568 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacaacTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAG  <  NC_000913/4209974‑4209876                                                                                                                                                                                                               GTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTG                                                                                                           >  1:2612846/1‑100 GTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTG                                                                                                           >  2:574266/1‑100   GAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAA                                                                                                         <  2:308173/100‑1    AAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAAC                                                                                                        <  1:2480151/100‑1     AAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACA                                                                                                       <  2:2196512/100‑1       GTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGCACAAC                                                                                                     >  2:1771937/1‑100       GTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC                                                                                                     <  1:1769472/100‑1        TCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACn                                                                                                    <  1:723685/100‑2                  TAATATCTCAAAACTCATCTTCGTGTTATGTTTGAGATATTTGCTCTTTAAAATTCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC                                                                                          <  2:840866/100‑1                  TAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC                                                                                          <  1:1619984/100‑1                  TAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC                                                                                          <  1:2341921/100‑1                  TAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC                                                                                          <  1:2476287/100‑1                  TAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTC                                                                                          <  2:2479098/100‑1                   AATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCA                                                                                         <  2:1518246/100‑1                    ATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAG                                                                                        <  1:1277291/100‑1                    ATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAG                                                                                        <  1:661059/100‑1                    ATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAG                                                                                        <  1:657402/100‑1                    ATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAG                                                                                        <  1:382993/100‑1                    ATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACCGAACAACTTTCGTTGTTCAG                                                                                        <  1:255970/100‑1                    ATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACCGAACAACTCTCGTTGTTCAG                                                                                        <  1:2867463/100‑1                     TATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGT                                                                                       <  2:1298826/100‑1                     TATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGT                                                                                       <  2:2857176/100‑1                     TATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGT                                                                                       <  2:405815/100‑1                     TATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAG                                                                                        <  1:1072591/99‑1                      ATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG                                                                                      <  1:2856957/100‑1                      ATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG                                                                                      <  1:1599474/100‑1                      ATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG                                                                                      <  1:76239/100‑1                      ATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTG                                                                                      <  2:1676883/100‑1                      ATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTG                                                                                      <  2:1591876/100‑1                      ATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACCCTCGTTGTTCAGTG                                                                                      <  1:1680427/100‑1                       TCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGT                                                                                     <  1:2852738/100‑1                       TCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGT                                                                                     <  1:1691664/100‑1                        CTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTT                                                                                    <  2:1190399/100‑1                        CTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTT                                                                                    >  2:1043510/1‑100                          CAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTC                                                                                  <  2:1614918/100‑1                          CAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTGTTTC                                                                                  >  2:1171965/1‑100                           AAAACTCATCTTCGGGTGATGTTTGATATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTGTTTCA                                                                                 <  2:400572/100‑1                           AAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGAATAAAGATAAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCA                                                                                 <  2:604727/100‑1                               CTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTT                                                                             <  2:2484461/100‑1                               CTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTGTTTCAATT                                                                              <  2:687219/99‑1                                     TTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCT                                                                       <  1:2873836/100‑1                                     TTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAG                                                                         <  2:1632139/98‑1                                         agtctTGTTTGATATATTTGCTCTTTAAACATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCATTGTTCAATGTTTCAATTTTCAGCTTGA                                                                    <  1:1796426/94‑1                                               GTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAT                                                             <  2:463210/100‑1                                                ctgcgaagtTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATT                                                            >  1:1127976/10‑100                                                     GATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAA                                                       <  1:1043512/100‑1                                                           TGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCA                                                 <  1:2097983/100‑1                                                             CTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAA                                               <  1:1171969/100‑1                                                               CTTTAAAAATCTGGATCAAGCTGAAATTTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAT                                              <  2:911402/99‑1                                                                 TTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATC                                           <  1:1219437/100‑1                                                                  TAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAacttc                                          <  1:2169669/100‑6                                                                        TCTGGATAAAGATGAAAATTGAAACACTGAATAACTCTCATTTTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACA                                    <  2:2856797/100‑1                                                                                             AAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATGTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGA               <  1:1396324/100‑1                                                                                                    GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTA        >  1:392292/1‑100                                                                                                    GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTA        >  1:1524401/1‑100                                                                                                    GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTA        >  1:395500/1‑100                                                                                                    GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTA        <  2:313543/100‑1                                                                                                     AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAA       >  2:2858734/1‑100                                                                                                     AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAA       >  2:1831171/1‑100                                                                                                     AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAA       <  2:1435572/100‑1                                                                                                     AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAA       <  1:618969/100‑1                                                                                                     AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTATTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAA       <  2:2166193/100‑1                                                                                                      ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAG      <  2:2048431/100‑1                                                                                                       CAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGG     >  2:488133/1‑100                                                                                                        AACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGC    <  1:119181/100‑1                                                                                                        AACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGC    <  1:2520351/100‑1                                                                                                        AACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGC    >  2:2480564/1‑100                                                                                                         ACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCA   >  2:2641434/1‑100                                                                                                         ACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCA   <  1:1831184/100‑1                                                                                                          CTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAG  >  2:2716125/1‑100                                                                                                          CTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAG  >  1:597518/1‑100                                                                                                                                                                                                               GTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4168463‑4168568 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacaacTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAG  <  NC_000913/4209974‑4209876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.