New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381292 =	NA (NA)	55 (0.520)	18/180	9.2	NA	noncoding (33/1331 nt)	IS2	repeat region
	?	NC_000913	381312 =	NA (NA)					noncoding (53/1331 nt)	IS2	repeat region
Rejected: Coverage evenness skew score above cutoff.

CGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT  >  NC_000913/381194‑381356                                                                                                   |                                                                 cGGTGGCAGACCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata                                                                 >  2:2079794/1‑100 (MQ=255) cGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata                                                                 <  1:2730211/100‑1 (MQ=255) cGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata                                                                 <  1:557313/100‑1 (MQ=255) cGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata                                                                 <  1:1826062/100‑1 (MQ=255) cGGTGCCAAAACTAATTTTGAAGAGATTTCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata                                                                 >  2:2737820/1‑100 (MQ=25)   gTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc                                                               <  2:1631586/100‑1 (MQ=255)    tGGCAACACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc                                                               <  1:1209986/99‑1 (MQ=255)    tGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa                                                              <  1:2126771/100‑1 (MQ=255)     ggCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAc                                                             >  1:491405/1‑100 (MQ=255)      gCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACt                                                            >  1:649257/1‑100 (MQ=255)       cAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt                                                           <  1:2690420/100‑1 (MQ=255)       cAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt                                                           >  1:1430526/1‑100 (MQ=255)        aaaaCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTa                                                          <  1:1172912/100‑1 (MQ=255)         aaaCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTa                                                          <  2:2194600/99‑1 (MQ=255)            ccAATTTTTACGCTATTGCGGATTATTGTGCCAGGACGAATAAACGCATAATCACTAGTCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATa                                                      >  2:961418/1‑100 (MQ=25)            ccAATTTTTACGCCATTGCTGATTATTGTGCCATGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAt                                                       >  2:1983159/1‑99 (MQ=255)            ccAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATa                                                      >  1:1518463/1‑100 (MQ=255)             cAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATaa                                                     >  2:622468/1‑100 (MQ=255)              aaTTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAg                                                    >  2:1220915/1‑100 (MQ=255)                tttttACGCCATTGTTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCATGAATCTCCAGACAACCAATATCACTTAAATAAGTg                                                  <  2:977722/100‑1 (MQ=255)                 ttttACGCCATTGCTGCTTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGa                                                 >  1:2675292/1‑100 (MQ=255)                  tttACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAt                                                >  2:301777/1‑100 (MQ=255)                    tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCACCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                              <  2:2480745/100‑1 (MQ=255)                      cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattg                                            <  2:49252/100‑4 (MQ=25)                       gCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattgg                                           <  1:1185227/100‑5 (MQ=25)                       gCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattgg                                           <  1:1870291/100‑5 (MQ=25)                       gCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt                                           <  1:353901/100‑1 (MQ=255)                       gCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt                                           <  1:710230/100‑1 (MQ=255)                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCTCTTATTTAAGTGATattggt                                          <  1:1976183/100‑6 (MQ=25)                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggt                                          <  1:1230708/100‑6 (MQ=25)                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggt                                          <  1:2753891/100‑6 (MQ=25)                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggt                                          <  1:1922811/100‑6 (MQ=25)                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggt                                          <  1:2294840/100‑6 (MQ=25)                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                          <  1:862498/100‑1 (MQ=255)                         cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggtt                                         <  2:1448889/100‑7 (MQ=25)                         cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattgg                                           <  2:55254/98‑5 (MQ=25)                         cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa                                         <  1:812813/100‑1 (MQ=255)                         cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa                                         <  2:812173/100‑1 (MQ=255)                          aTTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggttg                                        <  2:842039/100‑8 (MQ=25)                          aTTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                        <  2:17958/100‑1 (MQ=255)                          aTTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                        <  1:2010149/100‑1 (MQ=255)                           ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                       <  1:2871009/100‑1 (MQ=255)                           ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                       <  2:2535044/100‑1 (MQ=255)                           tggttGATTATTGTGCCACGACGAATAATCGCATAATTACTAGTCAGTCCTCCATAATCTCCAGACAACCAATATCACTTATTTAAGTGATattggt                                          <  2:2746162/93‑6 (MQ=16)                             gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     >  2:1782145/1‑100 (MQ=255)                              cTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                    >  2:2092964/1‑100 (MQ=255)                              cTGATTATTGTGCCAGGACGAATAAACGCATAATTACTACACTGGCCCCCTGACTCTCAATACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                    <  2:155877/100‑1 (MQ=21)                               ttattattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCACCCTGAATCTCCATACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                    <  2:670377/97‑1 (MQ=255)                               tGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     <  2:2853036/98‑1 (MQ=255)                                   tattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttt                               <  1:1441254/100‑1 (MQ=255)                                    attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtttt                              >  2:1193722/1‑100 (MQ=255)                                    attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtttt                              <  1:2473344/100‑1 (MQ=255)                                     ttGTGCCAGGACGAATAAACGCATAATTACTATACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                             <  2:2315127/100‑1 (MQ=255)                                     ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                             >  2:103154/1‑100 (MQ=255)                                      tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                            >  2:175428/1‑100 (MQ=255)                                      tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                            <  2:352234/100‑1 (MQ=255)                                      tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                            >  2:1913831/1‑100 (MQ=255)                                       gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  2:2096295/100‑1 (MQ=255)                                       gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  1:622470/100‑1 (MQ=255)                                        tgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGa                          >  2:84762/1‑100 (MQ=255)                                        tgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAATTTTTAGa                          >  1:555500/1‑100 (MQ=255)                                         gCCAGGACGAATAAACGCATAATTACTCGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         >  2:1129924/1‑100 (MQ=255)                                         gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         >  2:1816404/1‑100 (MQ=255)                                          ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                        >  2:2728897/1‑100 (MQ=255)                                            cgatctaaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAg                      <  2:125042/94‑1 (MQ=255)                                                cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt                  >  2:2157656/1‑100 (MQ=255)                                                cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt                  >  2:884059/1‑100 (MQ=255)                                                  aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAgagatcg                >  1:125042/1‑94 (MQ=255)                                                  aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTg                >  2:1168553/1‑100 (MQ=255)                                                  aaTAAACGCATAATTACTAGACTGGCCCCCTGAATATCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGATTTTAGACTAGTCATTg                >  2:225833/1‑100 (MQ=255)                                                  aaTAAACGCATAATTACTAGACTGGCCCCCGGACTCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTg                >  2:1900316/1‑100 (MQ=255)                                                   aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg               <  1:252120/100‑1 (MQ=255)                                                   aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg               >  1:245876/1‑100 (MQ=255)                                                    tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga              >  2:1859491/1‑100 (MQ=255)                                                    tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATACTCTTAATACTAGTTTTTAGACTAGTCATTGga              <  1:2736311/100‑1 (MQ=255)                                                     aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag             <  2:1479000/100‑1 (MQ=255)                                                     aaaCGCATAATTACTAGACTGGCACACTTACTCTGTAGACAACCAATATTACTTAAATAAGTGATAGTCTTAATACTAGTCTAAAAACTAGtattaagac             <  2:1088078/100‑9 (MQ=9)                                                      aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgaga            <  1:2328252/100‑1 (MQ=255)                                                         gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa         >  2:26217/1‑100 (MQ=38)                                                          cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAg        <  2:2037372/100‑1 (MQ=38)                                                            tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat      <  1:1171468/100‑1 (MQ=35)                                                            tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat      <  1:84762/100‑1 (MQ=35)                                                             aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg     <  1:2380566/100‑1 (MQ=33)                                                             aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg     >  2:448272/1‑100 (MQ=33)                                                               ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatgat   >  1:2329925/1‑100 (MQ=31)                                                                tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt  <  2:1819575/100‑1 (MQ=11)                                                                tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt  <  1:1463566/100‑1 (MQ=11)                                                                                                   |                                                                 CGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT  >  NC_000913/381194‑381356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.