| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 36.4% | 273.0 / 199.8 | 195 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (63/61); new base A (70/1); total (133/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.54e-01 | |||||||||||
Only 100 of 205 total aligned reads displayed.
CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 | cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg > 1:2457955/1‑100 (MQ=255)cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg < 1:2553735/100‑1 (MQ=255) aGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCGTTGTTTATGCCGGATgc > 2:2507133/1‑100 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgc > 1:1000697/1‑99 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTATTTATGCCGGATgcg > 1:2841906/1‑100 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt > 1:2204376/1‑100 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 1:2095611/100‑1 (MQ=255) naGTATTGCTGCCGGATGGCGCTGCACGCAGAGGNACANCGCCNCCNGGTANACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 1:1402848/2‑100 (MQ=255) aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 1:152175/1‑100 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc > 2:1916493/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc > 1:1151360/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:1602278/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:1981048/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2184057/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt < 2:944258/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 2:1570983/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:1875217/1‑100 (MQ=255) cctgATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 1:57057/97‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:2049852/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:202900/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:697841/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2802245/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCCGGTATTCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1954071/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa < 1:2191731/100‑1 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:1808665/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:270829/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:354577/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:1726175/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:522884/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt < 2:411961/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:181582/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt > 1:1057510/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:1877781/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:2364772/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:394598/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGTCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 2:2704773/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 1:1263404/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:66680/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑Ag > 2:1185729/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑At < 2:233905/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑At‑t < 2:2457939/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑At‑tt > 2:2602900/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑At‑ttt > 1:421559/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTc > 2:1407566/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTc < 2:1263636/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑g < 1:2569771/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑g > 1:2166583/1‑100 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAgg < 2:2125858/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAgg > 2:97915/7‑100 (MQ=18) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAgg > 1:1916155/7‑100 (MQ=18) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGc < 1:996075/100‑1 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGAt > 2:764674/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATa > 1:371195/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATa < 2:477514/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATa > 1:1630597/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 2:654336/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 1:2240555/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 2:1482778/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 1:1779697/100‑1 (MQ=255) gcttttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑AGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAgcg > 2:2197671/11‑100 (MQ=17) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcgc < 2:73948/100‑1 (MQ=255) gttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑AGG‑AA‑ACAC‑‑GTAGGCCTGATAAGCGAAgcgc > 1:2581205/10‑100 (MQ=18) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:2571594/100‑1 (MQ=255) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1026383/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCGCGCCGCATCCGGCATAC‑AAAAGTTTGCAAATTCAATAAATTGC‑‑AGA‑AT‑GCAT‑‑GTAGGCCTGATAAGCGAAGCACATc > 2:2452989/7‑100 (MQ=12) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCACTACATTGC‑‑AGC‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCagc < 1:1951477/100‑3 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:2072212/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTGC‑‑A‑A‑TA‑TGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:747543/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCGTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:500621/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑ACC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2422358/5‑100 (MQ=21) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGC‑‑AAT‑CT‑TCTG‑‑GTAGGCCTGATAAGCATCGCGCATCAgg > 1:1280926/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGT‑‑GGG‑CT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:301902/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑AGG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:356265/4‑100 (MQ=21) nggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1712541/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑AGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:217107/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑AGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:2344368/3‑100 (MQ=25) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑AGG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:1784239/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑AGG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2127215/3‑100 (MQ=21) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:2019591/3‑100 (MQ=18) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AC‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:1243322/3‑100 (MQ=17) aggCCGGATAAGGCGGTCACGCCGCATCCGGCCTAC‑GAAACCGCAAGAATTCAATATATTGC‑‑AGG‑AG‑CGGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1635350/3‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:2230712/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑AGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2830079/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1065231/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2647303/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑AGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:2689107/2‑100 (MQ=25) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑AGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:1327292/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGA‑‑TCG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1028915/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGC‑‑AGAGAT‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1217599/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGC‑‑AGG‑AT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:600718/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑AGG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:2828885/2‑100 (MQ=21) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑AGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:806694/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑ACC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1572285/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑AGG‑AA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCag > 1:879250/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑AGG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 2:2866730/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGAGA‑AA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctgt > 2:2659404/1‑97 (MQ=21) ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGAGA‑AA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctgtt > 1:477658/1‑96 (MQ=21) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2841885/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:806011/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:2307376/100‑1 (MQ=255) | CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |