| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,978 | 0 | A | C | 32.5% | 353.7 / 238.3 | 238 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (68/71); new base C (63/4); total (163/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.83e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.92e-01 | |||||||||||
Only 100 of 243 total aligned reads displayed.
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 | gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 2:1010725/1‑100 (MQ=255) naGTATTGCTGCCGGATGGCGCTGCACGCAGAGGNACANCGCCNCCNGGTANACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 1:1402848/2‑100 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc > 2:1916493/1‑100 (MQ=255) tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGc > 2:2523086/1‑100 (MQ=255) tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGc > 1:2233660/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:1602278/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:2826148/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2180198/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt < 2:944258/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 2:1570983/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:2669894/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:1812156/1‑100 (MQ=255) cctgATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 1:57057/97‑1 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 1:377671/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:2049852/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:689082/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:202900/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1095002/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2860538/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 2:1322059/1‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACa < 1:1420361/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaa < 1:2191731/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaa > 1:2638991/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaa < 2:797524/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAAt > 1:1007048/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc > 1:271997/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCa > 2:1065124/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCa < 2:522884/100‑1 (MQ=255) nacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:397039/2‑100 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGTCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATa < 2:2704773/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAt < 1:791655/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTg > 1:1263404/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 2:711688/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑g > 2:1185729/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑Gaa > 2:2846732/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt < 2:233905/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑tt > 2:2602900/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTc < 2:1263636/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAgg > 2:97915/7‑100 (MQ=18) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGa > 1:1797744/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGa > 1:1091185/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGcn < 2:397038/100‑2 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 2:1482778/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:216799/100‑1 (MQ=255) gcttttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAgcg > 2:2197671/11‑100 (MQ=17) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1876506/1‑100 (MQ=255) gttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGC‑‑A‑GGAA‑ACAC‑‑GTAGGCCTGATAAGCGAAgcgc > 1:2581205/10‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑AAT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCAt > 1:1181570/8‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCACTACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:2594305/1‑100 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:757035/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTCGCGCCGCATCCGGCATACAAAAGTTTGCAAATTCAATAAATTGC‑‑A‑GAAT‑GCAT‑‑GTAGGCCTGATAAGCGAAGCACATc > 2:2452989/7‑100 (MQ=12) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:2695557/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:2072212/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:944187/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:421558/100‑1 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCGTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:500621/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2422358/5‑100 (MQ=21) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGC‑‑A‑ATCT‑TCTG‑‑GTAGGCCTGATAAGCATCGCGCATCAgg > 1:1280926/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2459294/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2018793/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:356265/4‑100 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1655796/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:680191/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:2344368/3‑100 (MQ=25) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2434943/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGC‑‑A‑GGGA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:1784239/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2127215/3‑100 (MQ=21) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAC‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:1243322/3‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1685046/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2830079/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:315588/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1055559/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:1927959/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGC‑‑AGGGAC‑TAT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 2:2094932/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:600718/2‑100 (MQ=18) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACTTTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGAGCATCAGGc > 2:2493784/2‑99 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:310663/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1347844/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1572285/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctgt > 2:2659404/1‑97 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:2310095/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:1773462/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:2784144/9‑98 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1874648/1‑100 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2224785/1‑98 (MQ=17) ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctgtt > 1:477658/1‑96 (MQ=21) caggataaggcgTTCACGCCGCATCCTGCCTACAAAAGCACGCAAATTCAATATATTGC‑‑A‑GAGA‑TGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:819304/9‑100 (MQ=14) cggataaggcgTTTACGCCGCATCCGGCATACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:1429748/8‑97 (MQ=17) cgatctaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGC‑‑AGGAAC‑GAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaact < 1:1146744/93‑4 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2001385/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:2271105/7‑98 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TCAT‑‑GTACGCCTGATACGCGTAGCGCATCAGGCAtttat > 2:1952617/7‑98 (MQ=21) gataaggcgTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattct > 1:1640765/6‑95 (MQ=25) ggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 1:828002/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:1630585/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:2159031/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1876493/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1221602/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc > 1:134289/1‑100 (MQ=255) aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1967762/1‑100 (MQ=255) | GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |