Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,923,182 T→C L201L (CTA→CTG truC ← tRNA(Ile1,Asp) pseudouridine(65) synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,923,1820TC99.0% 352.2 / ‑4.8 100L201L (CTA→CTGtruCtRNA(Ile1,Asp) pseudouridine(65) synthase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (56/43);  total (57/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01

Only 100 of 101 total aligned reads displayed.

TTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGG  >  NC_000913/2923086‑2923278
                                                                                                |                                                                                                
ttGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGc                                                                                               <  1:2160034/100‑1 (MQ=255)
 tgtgATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATgcagca                                                                                              <  1:1316850/100‑1 (MQ=255)
  gtgATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTTAAAGGATGCGTCAATGACAACTGATTGGCATGCAGCAt                                                                                             <  2:1785389/100‑1 (MQ=255)
  gtgATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCAt                                                                                             >  2:1449907/1‑100 (MQ=255)
      tAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAAc                                                                                         >  1:544553/1‑100 (MQ=255)
      tAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAAc                                                                                         <  1:230759/100‑1 (MQ=255)
         cGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGc                                                                                      >  2:751665/1‑100 (MQ=255)
         cGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGc                                                                                      <  2:1121249/100‑1 (MQ=255)
            cTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTgg                                                                                   <  1:935867/100‑1 (MQ=255)
             tGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGa                                                                                  >  2:45106/1‑100 (MQ=255)
              gCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAg                                                                                 <  2:2189133/100‑1 (MQ=255)
               cATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTTGCCAGTAAAAGGATGCGTGAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAgg                                                                                >  2:1173559/1‑100 (MQ=255)
                aTCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAACGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGc                                                                               <  1:2305032/100‑1 (MQ=255)
                aTCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGc                                                                               >  1:472233/1‑100 (MQ=255)
                aTCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGc                                                                               >  1:938429/1‑100 (MQ=255)
                 tCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGcc                                                                              >  2:1473977/1‑100 (MQ=255)
                   cAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCaa                                                                            >  2:2756581/1‑100 (MQ=255)
                      gtgtCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAAt                                                                         <  1:1343884/100‑1 (MQ=255)
                      gtgtCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAAt                                                                         >  1:1293277/1‑100 (MQ=255)
                        gtcgtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGc                                                                       >  2:2512975/1‑100 (MQ=255)
                         tcgtcCAGGCCCGCGTGAATAGTCAACGGCTCGCCAGTAAAAGGTTGCGTCAATGACAACAGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGc                                                                       <  2:166020/99‑1 (MQ=255)
                          cgtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTc                                                                     <  2:2873328/100‑1 (MQ=255)
                          cgtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTc                                                                     >  1:2368909/1‑100 (MQ=255)
                           gtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCa                                                                    >  1:2139151/1‑100 (MQ=255)
                            tcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAg                                                                   >  2:1492828/1‑100 (MQ=255)
                            tcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAg                                                                   <  1:688061/100‑1 (MQ=255)
                            tcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAg                                                                   <  2:792160/100‑1 (MQ=255)
                             ccAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGc                                                                  <  2:834146/100‑1 (MQ=255)
                              cAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCa                                                                 <  2:1498626/100‑1 (MQ=255)
                              cAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCa                                                                 >  2:2190793/1‑100 (MQ=255)
                                ggCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCAcc                                                               >  2:2820354/1‑100 (MQ=255)
                                   ccGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGTCTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCt                                                            >  2:2364991/1‑100 (MQ=255)
                                   ccGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCACTAACCGCTGGAGGCCAAAATGCTCAGCACCGCt                                                            <  2:1735667/100‑1 (MQ=255)
                                    cgcgTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTg                                                           <  1:1629147/100‑1 (MQ=255)
                                     gcgTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGc                                                          <  2:121104/100‑1 (MQ=255)
                                     gcgTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGc                                                          >  1:2466873/1‑100 (MQ=255)
                                      cgTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCg                                                         <  2:291738/100‑1 (MQ=255)
                                        tGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGAt                                                       <  2:544551/100‑1 (MQ=255)
                                        tGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGAt                                                       <  1:1714734/100‑1 (MQ=255)
                                               tCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCg                                                <  1:91878/100‑1 (MQ=255)
                                                cAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGt                                               >  2:2389774/1‑100 (MQ=255)
                                                 aGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTa                                              <  1:1195249/100‑1 (MQ=255)
                                                 aGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTa                                              >  1:2810462/1‑100 (MQ=255)
                                                   cGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGt                                               <  2:2401824/97‑1 (MQ=255)
                                                    ggCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAAt                                           >  1:667761/1‑100 (MQ=255)
                                                      cTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCg                                         <  1:285197/100‑1 (MQ=255)
                                                       tCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGc                                        <  1:2307923/100‑1 (MQ=255)
                                                       tCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGc                                        >  1:2660407/1‑100 (MQ=255)
                                                        cGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGcc                                       <  1:391090/100‑1 (MQ=255)
                                                          ccAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCAt                                     <  1:2190806/100‑1 (MQ=255)
                                                          ccAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCAt                                     >  1:2207496/1‑100 (MQ=255)
                                                            aGTAAAAGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGt                                   >  2:361642/1‑100 (MQ=255)
                                                               aaaaGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCTATGTTTg                                >  2:1558661/1‑100 (MQ=255)
                                                               aaaaGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTg                                >  1:1899435/1‑100 (MQ=255)
                                                                aaaGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGc                               <  2:1293272/100‑1 (MQ=255)
                                                                  aGGATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTa                             >  2:185896/1‑100 (MQ=255)
                                                                   ggATGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTAt                            >  2:2114522/1‑100 (MQ=255)
                                                                     aTGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCg                          <  1:1572320/100‑1 (MQ=255)
                                                                     aTGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCg                          >  1:2215967/1‑100 (MQ=255)
                                                                      tGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGc                         >  2:1300808/1‑100 (MQ=255)
                                                                      tGCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGc                         >  1:1719343/1‑100 (MQ=255)
                                                                       gCGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGcc                        >  2:1418092/1‑100 (MQ=255)
                                                                        cGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCa                       >  1:2578261/1‑100 (MQ=255)
                                                                        cGTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCa                       >  1:564398/1‑100 (MQ=255)
                                                                         gTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaa                      <  1:517470/100‑1 (MQ=255)
                                                                         gTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaa                      <  2:2466857/100‑1 (MQ=255)
                                                                         gTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaa                      >  1:621450/1‑100 (MQ=255)
                                                                         gTCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaa                      <  2:2101051/100‑1 (MQ=255)
                                                                          tCAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaat                     <  2:1264427/100‑1 (MQ=255)
                                                                           cAATGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaata                    >  1:2471809/1‑100 (MQ=255)
                                                                            aaTGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaataa                   >  1:153698/1‑100 (MQ=255)
                                                                            aaTGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaataa                   >  1:722115/1‑100 (MQ=255)
                                                                            aaTGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaataa                   >  2:117039/1‑100 (MQ=255)
                                                                            aaTGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaat                     <  2:1182698/98‑1 (MQ=255)
                                                                             aTGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaataat                  >  2:178677/1‑100 (MQ=255)
                                                                              tGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                 <  1:751667/100‑1 (MQ=255)
                                                                              tGACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                 <  2:2810441/100‑1 (MQ=255)
                                                                               gACAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCg                <  1:2535200/100‑1 (MQ=255)
                                                                                aCAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCgg               <  2:722113/100‑1 (MQ=255)
                                                                                aCAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCgg               >  2:1282108/1‑100 (MQ=255)
                                                                                aCAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCACTGCGATTCAGGCGTAAATCGCCACGTTTGCTATCGCCAATAATCgg               >  2:1951718/1‑100 (MQ=255)
                                                                                 cAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAACTCGCCATGTTTGCTATCGCCAATAATCGGa              <  1:2831983/100‑1 (MQ=255)
                                                                                 cAACTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGa              >  1:1417125/1‑100 (MQ=255)
                                                                                  aaCTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGAt             >  2:821585/1‑100 (MQ=255)
                                                                                  aaCTGACTGGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGAt             <  1:678282/100‑1 (MQ=255)
                                                                                   nctgactgGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATg            >  2:830448/2‑100 (MQ=255)
                                                                                   actgactgGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATg            >  2:430974/1‑100 (MQ=255)
                                                                                    ctgactgGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGa           >  1:1257773/1‑100 (MQ=255)
                                                                                    ctgactgGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGa           >  1:2831068/1‑100 (MQ=255)
                                                                                    ctgactgGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGa           >  1:1630492/1‑100 (MQ=255)
                                                                                     tgactgGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGAc          <  1:1565301/100‑1 (MQ=255)
                                                                                        ctgGCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCCCCGCTGCGATTCTGGCGTAGATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCa       >  2:1581599/1‑100 (MQ=255)
                                                                                          ggCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCaaa     >  1:403766/1‑100 (MQ=255)
                                                                                          ggCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCaaa     >  1:1631341/1‑100 (MQ=255)
                                                                                           gCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAAt    >  2:1508032/1‑100 (MQ=255)
                                                                                           gCATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAAt    <  2:2207483/100‑1 (MQ=255)
                                                                                            cATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATg   >  2:420758/1‑100 (MQ=255)
                                                                                            cATGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATg   >  1:2719455/1‑100 (MQ=255)
                                                                                            cATGCAGCATTAACCGCTAGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTAGCTATCGCCAATAATCGGATGACGCAAATg   <  2:1074447/100‑1 (MQ=255)
                                                                                             aTGCAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATgg  >  2:817824/1‑100 (MQ=255)
                                                                                                |                                                                                                
TTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGG  >  NC_000913/2923086‑2923278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: