| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913 | 3,596,220 | (TCA)3→2 | 61.9% | coding (182‑184/927 nt) | livH ← | branched‑chain amino acid ABC transporter permease |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3596215 = | 35 (0.400) | 51 (0.640) | 42/162 | NT | 61.9% | coding (189/927 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | = 3596211 | 31 (0.390) | coding (193/927 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
GCTACACCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3596321‑3596215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgatgGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTTACCGC < NC_000913/3596211‑3596113 GCTACACCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCT > 1:151787/1‑100 TACACCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGA > 2:2063564/1‑100 ACACCATGGTTTACGGCATTATCGGCATGATCGACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGAT > 1:2235440/1‑100 CACCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATG < 1:1123964/100‑1 CACCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATG > 2:1445087/1‑100 CCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGAT < 1:1873404/100‑1 CCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTAAGTCTCATTTATGATCATCGCCGCGCTGATGA > 2:110907/1‑99 TGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGG < 2:877551/100‑1 GGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGC < 1:1224081/100‑1 GGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGC < 2:780556/100‑1 CGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGAT < 1:486194/100‑1 GCATTATCGGCATGATCAACTTCGCCCACCGCGAGGGTTATATGATTGGCAGCTAAGTCTCATTTATGAACATCGCCGCGCTGATGATGGGTATTGATAC > 2:1104058/1‑100 TATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGC < 1:788264/100‑1 TCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTG < 2:994196/100‑1 TCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTG < 1:1313887/100‑1 CGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGG > 2:1803164/1‑100 TGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCT > 1:660876/1‑100 ATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGG < 1:64075/100‑1 ATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGG > 1:636138/1‑100 CTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCT > 1:123355/1‑100 CTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCT < 1:26866/100‑1 TCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGC > 2:2164576/1‑100 TCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGC > 2:1563166/1‑100 CGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCG < 1:1258627/100‑1 GCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGG < 1:213621/100‑1 CCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGG < 2:1531460/100‑1 CCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGG > 1:155827/1‑100 CACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGAT < 2:973319/100‑1 ACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATT > 1:927949/1‑100 ACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATT < 2:1615541/100‑1 CGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTC > 1:358805/1‑100 CGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGAATTCGTC < 2:1235437/100‑1 AGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGG < 1:1437945/100‑1 GGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGAATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGC > 1:403483/1‑100 TATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATC > 1:578157/1‑100 TATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATC > 1:575369/1‑100 ATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGTCTGGCTGCTGGTCGCTGCGGTATTCGTCGGCGCAAT > 2:1059656/1‑98 TGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGT > 2:1888023/1‑100 TGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGT > 1:786760/1‑100 TGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGT > 1:915914/1‑100 GATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTC < 1:967646/100‑1 TTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCAT < 1:2092415/100‑1 TGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATT > 2:628210/1‑100 GGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTG > 2:632087/1‑100 TCTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTA > 1:1458726/1‑100 CTCATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTAC > 1:356452/1‑100 CATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGG > 2:2058914/1‑100 agTTATGATCAGCGCCGCGCTGATGATGGGCATTGAGACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGG < 2:468599/97‑1 ATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGC < 2:578154/100‑1 ATTTATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGC < 2:575366/100‑1 TTATGATCATCGCCGCGCTGATGATGGGCATTGAGACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTG < 1:192474/100‑1 TATGATCATCGCCGCGGTGATGAGGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGG < 2:375944/100‑1 ATGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGA > 2:982636/1‑100 TGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAG < 1:2063580/100‑1 TGATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAG < 1:1548880/100‑1 GATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGT > 1:1733905/1‑100 GATCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAG > 2:861079/1‑99 TCATCGCCGCGCTGATGATGGGCATTGATACCGGTTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTAT > 1:1778605/1‑100 TCATCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTAT > 1:900543/1‑100 TCGCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGA > 1:458092/1‑100 gtCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAAC > 2:547180/3‑100 GCCGCGCTGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAAC > 2:496675/1‑100 TGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGC < 1:1294216/100‑1 TGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGC > 2:1987053/1‑100 TGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGC < 2:1928764/100‑1 GATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCT < 2:123354/100‑1 TGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTTA > 1:2022589/1‑100 TGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTT < 1:1331603/99‑1 GATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGATGGAGTATCGAACGGGTGGCTTA > 2:357920/1‑99 ATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTTACC < 1:1631101/100‑1 TGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTTACCG < 1:1042970/100‑1 GGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTTACCGC > 1:835294/1‑100 GCTACACCATGGTTTACGGCATTATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3596321‑3596215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgatgGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGATTCGTCGGCGCAATCGTCATTGCCAGCGCCTACGGCTGGAGTATCGAACGGGTGGCTTACCGC < NC_000913/3596211‑3596113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |