New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4132350	NA (NA)	5 (0.060)	4/162	NT	NA	noncoding (4/34 nt)	REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4132380	NA (NA)					noncoding (34/34 nt)	REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences

GGCACAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGgccggatt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4132252‑4132350 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAAATT  <  NC_000913/4132380‑4132275                                                                                                                                                                                                               GGCACAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGG                                                                                                           <  1:689100/100‑1   CACAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCC                                                                                                         >  2:660745/1‑100   CACAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCC                                                                                                         >  2:416229/1‑100    ACAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCG                                                                                                        >  2:2123940/1‑100     CAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGG                                                                                                       <  1:233564/100‑1      AGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGA                                                                                                      <  2:1210761/100‑1      AGTTGTTGTAATTTCAGAAATTTAAGAGTGCCGGGTACTCGTGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGA                                                                                                      <  1:960953/100‑1       GTTGTTGTTATTTCAGAAATTTAATAATGCCCGGTATTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGAT                                                                                                     <  2:1487811/100‑1       GTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGAT                                                                                                     >  1:1178140/1‑100        TTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGATT                                                                                                    <  1:1306390/100‑1                              ATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAAGATTAGGCCGGATTCGTCGTAAACGCTTAATCCGGC                                                                              <  1:1659896/100‑1                               TAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGATTCGTCGTAAACGCTTAATCCGGCC                                                                             <  2:59852/100‑1                                AATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGATTCGTCGTAAACGCTTAATCCGGCCT                                                                            <  1:1308137/100‑1                                AATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGATTCGTCGTAAACGCTTAATCCGGCCT                                                                            <  1:1308092/100‑1                                         TACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATG                                                                   <  2:2040520/100‑1                                                                                                    GCCGGATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTAT        >  2:277883/1‑100                                                                                                     CCGGATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATT       <  1:2025126/100‑1                                                                                                       GGATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAA     <  2:2289614/100‑1                                                                                                        GATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAAA    <  1:113531/100‑1                                                                                                         ATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAAAT   >  2:873870/1‑100                                                                                                          TTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAAATT  <  2:525379/100‑1                                                                                                          TTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAAATT  <  2:740736/100‑1                                                                                                                                                                                                               GGCACAGTTGTTGTAATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGgccggatt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4132252‑4132350 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATTCGTCGTAAACGCTTAATCCGGCCTAATCCTATGATAATTCAATATATTTCATTAGAAACCATAAACCCGAAAACATGAGTACCGGGCATTATTAAATT  <  NC_000913/4132380‑4132275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.