New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4285342	NA (NA)	3 (0.040)	3/164	NT	NA	noncoding (41/77 nt)	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 4285374	NA (NA)					noncoding (73/77 nt)	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences

GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4285244‑4285342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT  <  NC_000913/4285374‑4285269                                                                                                                                                                                                               GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATG                                                                                                           >  2:247286/1‑100  TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGC                                                                                                          <  2:484113/100‑1  TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGC                                                                                                          >  2:2220815/1‑100   TTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCC                                                                                                         >  2:379480/1‑100   TTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCC                                                                                                         <  1:1565817/100‑1   TTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCC                                                                                                         <  1:212531/100‑1   TTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACACCGCATCCGGCAATCAATGCC                                                                                                         <  2:910898/100‑1    TTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCT                                                                                                        <  1:2081456/100‑1     TAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTG                                                                                                       >  1:1547189/1‑100     TAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTG                                                                                                       <  1:657420/100‑1      AATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGA                                                                                                      >  2:427655/1‑100       ATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT                                                                                                     >  2:544967/1‑100       ATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT                                                                                                     >  2:2239169/1‑100                                    CGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTG                                                                        <  2:818064/100‑1                                     GCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGA                                                                       <  2:1836549/100‑1                                      CTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGAT                                                                      <  1:1550667/100‑1                                                                                                    GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGCTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAA        >  1:1449068/1‑100                                                                                                      CTGATAAGACGCGACAGCGTCGCAGCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACC      <  1:120027/100‑1                                                                                                       TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTACCCT     >  2:2285159/1‑100                                                                                                       TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCT     >  1:2300580/1‑100                                                                                                        GATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTT    >  2:1849481/1‑100                                                                                                        GATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTT    >  2:2116426/1‑100                                                                                                        GATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTT    >  1:832609/1‑100                                                                                                        GATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTT    >  1:2012473/1‑100                                                                                                         ATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTC   >  1:1108154/1‑100                                                                                                          TAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGTCAAGGGGTACCCGAGCGTTAACCTTC   >  1:1024704/1‑99                                                                                                          TAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCCGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT  <  2:1650563/100‑1                                                                                                                                                                                                               GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4285244‑4285342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT  <  NC_000913/4285374‑4285269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.