New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4587878NA (NA)8 (0.100) 6/162 NT NA noncoding (7/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4587891 NA (NA)noncoding (20/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences

AACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587772‑4587878
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  NC_000913/4587891‑4587793
                                                                                                                                                                                                              
AACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAG                                                                                                            >  1:1812830/1‑100
  CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGC                                                                                                          >  1:604816/1‑100
    CCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCG                                                                                                        >  1:287356/1‑100
      TGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGA                                                                                                      >  1:2323512/1‑100
                            CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGGCGGATAAGGCGCAGCCGCATCCGGCC                                                                                <  1:1432599/100‑1
                            CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCC                                                                                <  1:561442/100‑1
                             GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:1754782/100‑1
                             GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:1085542/100‑1
                                  AGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATAT                                                                          <  1:836552/100‑1
                                     GGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATCTTTC                                                                       >  2:577855/1‑100
                                       TTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCAC                                                                     <  2:316181/100‑1
                                                                                TATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACG                            <  1:577858/100‑1
                                                                                                    GCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGT        >  2:252235/1‑100
                                                                                                     CCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTT       <  1:688162/100‑1
                                                                                                      CGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTT      <  1:1883536/100‑1
                                                                                                       GGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTT     <  2:200200/100‑1
                                                                                                         ATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG   <  2:867045/100‑1
                                                                                                          TAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  2:1698690/100‑1
                                                                                                                                                                                                              
AACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587772‑4587878
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  NC_000913/4587891‑4587793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.