| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4634391 = | 92 (1.060) | 3 (0.040) | 3/164 | NT | 3.4% | coding (595/648 nt) | ytjC | phosphatase |
| ? | NC_000913 | 4634423 = | 84 (1.050) | coding (627/648 nt) | ytjC | phosphatase | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CGGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4634496‑4634391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctgcATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTA > NC_000913/4634423‑4634521 CGGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTC < 1:774279/100‑1 GGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCC > 1:1728533/1‑100 GGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCC < 1:598109/100‑1 GAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCC < 1:1200276/100‑1 AGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCT > 2:911599/1‑100 AGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCT > 2:2026686/1‑100 GATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTG > 2:2036633/1‑100 TCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTG > 1:1159402/1‑100 CTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGG > 2:1498316/1‑100 AATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAGTTGGGC > 2:1530883/1‑100 CCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGG > 1:1185408/1‑100 CCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGG > 1:1369963/1‑100 CCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCGCCCGCTTTGGCATCTTCTGCCGGG > 1:1282951/1‑100 CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCTTCTTCTGCCGGGT < 1:1582415/100‑1 CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGT > 2:1033164/1‑100 CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGT > 1:852443/1‑100 CCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGG > 2:1383306/1‑98 CTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTA < 2:1157292/100‑1 CATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTA > 2:46173/1‑100 CGGGAGATCGCCCAATTAATCTACGCTGTGAACTGCTGATTCCGATCCGTCGTTAACGCTGCAGCTCATCTAATGCAGGGGCGTCCAGATGCGAGATGTCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4634496‑4634391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctgcATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTA > NC_000913/4634423‑4634521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |